Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LHH

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N N N 0 -3.908 0.514 0.589
2 C5 C C2 N N N 0 -3.744 -0.49 1.563
3 C6 C C3 N N N 0 -2.559 -1.143 1.639
4 N1 N N1 N N N 0 -1.559 -0.813 0.774
5 C7 C C4 N N N 0 -5.262 2.152 -0.448
6 N3 N N2 N N N 0 -2.908 0.802 -0.232
7 N4 N N3 N N N 0 -5.108 1.192 0.486
8 C1 C C5 N N N 0 -1.041 -4.167 -1.603
9 C2 C C6 N N N 0 -1.748 0.152 -0.145
10 C1' C C7 R N N 0 -0.273 -1.51 0.846
11 C2' C C8 R N N 0 -0.025 -2.331 -0.445
12 C3' C C9 R N N 0 1.52 -2.434 -0.472
13 C4' C C10 R N N 0 1.991 -1.272 0.424
14 C5' C C11 N N N 0 2.898 -0.333 -0.375
15 CM7 C C12 N N N 0 -6.57 2.891 -0.56
16 O2 O O1 N N N 0 -0.842 0.435 -0.912
17 O2' O O2 N N N 0 -0.62 -3.626 -0.349
18 O3' O O3 N N N 0 1.947 -3.686 0.067
19 O4' O O4 N N N 0 0.818 -0.565 0.86
20 O5' O O5 N N N 0 3.422 0.674 0.492
21 O7 O O6 N N N 0 -4.347 2.422 -1.197
22 OP1 O O7 N N N 0 5.806 1.178 -0.496
23 OP2 O O8 N N N 0 3.795 2.56 -1.143
24 P P P1 N N N 0 4.417 1.835 -0.013
25 H1 H H1 N N N 0 -4.549 -0.735 2.239
26 H2 H H2 N N N 0 -2.408 -1.916 2.378
27 H3 H H3 N N N 0 -5.84 0.977 1.085
28 H4 H H4 N N N 0 -1.482 -5.151 -1.445
29 H5 H H5 N N N 0 -1.781 -3.505 -2.055
30 H6 H H6 N N N 0 -0.181 -4.257 -2.267
31 H7 H H7 N N N 0 -0.236 -2.156 1.724
32 H8 H H8 N N N 0 -0.394 -1.798 -1.322
33 H9 H H9 N N N 0 1.893 -2.307 -1.488
34 H10 H H10 N N N 0 2.532 -1.664 1.286
35 H11 H H11 N N N 0 3.719 -0.903 -0.808
36 H12 H H12 N N N 0 2.321 0.137 -1.171
37 H13 H H13 N N N 0 -6.546 3.773 0.08
38 H14 H H14 N N N 0 -6.727 3.198 -1.595
39 H15 H H15 N N N 0 -7.385 2.238 -0.248
40 H16 H H16 N N N 0 2.907 -3.804 0.075
41 H17 H H17 N N N 0 6.27 0.686 0.195
42 OP3 O OP3 N N N 0 4.701 2.862 1.193
43 H18 H H18 N N N 0 5.294 3.589 0.96