Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LIV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 107


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C11 C C11 S N N 0 -4.807 1.406 -0.569
2 O11 O O11 N N N 0 -5.277 0.67 0.563
3 C21 C C21 R N N 0 -4.021 2.629 -0.091
4 N21 N N21 N N N 0 -2.861 2.191 0.696
5 C31 C C31 N N N 0 -4.932 3.499 0.781
6 C41 C C41 S N N 0 -6.209 3.813 -0.006
7 O41 O O41 N N N 0 -7.137 4.498 0.837
8 C51 C C51 R N N 0 -6.831 2.501 -0.491
9 O51 O O51 N N N 0 -5.92 1.826 -1.356
10 C61 C C61 N N N 0 -8.124 2.803 -1.25
11 O61 O O61 N N N 0 -8.759 1.576 -1.615
12 C12 C C12 R N N 0 -6.089 -3.483 0.519
13 C52 C C52 R N N 0 -4.496 -1.587 0.191
14 N12 N N12 N N N 0 -6.497 -4.806 0.027
15 C62 C C62 S N N 0 -4.921 -2.964 -0.322
16 O62 O O62 N N N 0 -3.821 -3.87 -0.221
17 O52 O O52 N N N 0 -3.405 -1.101 -0.595
18 C42 C C42 R N N 0 -5.674 -0.616 0.083
19 C32 C C32 S N N 0 -6.841 -1.136 0.925
20 N32 N N32 N N N 0 -7.972 -0.204 0.821
21 C22 C C22 N N N 0 -7.266 -2.513 0.411
22 C13 C C13 S N N 0 -2.207 -1.554 0.038
23 C23 C C23 R N N 0 -0.974 -1.18 -0.815
24 O23 O O23 N N N 0 -0.551 -2.294 -1.604
25 C33 C C33 S N N 0 0.106 -0.814 0.227
26 C44 C C44 S N N 0 4.736 -0.061 -1.445
27 C43 C C43 R N N 0 -0.599 -1.008 1.588
28 O43 O O43 N N N 0 -2.008 -0.869 1.294
29 C53 C C53 N N N 0 -0.155 0.065 2.584
30 O53 O O53 N N N 0 -0.788 -0.163 3.844
31 O44 O O44 N N N 0 5.512 -0.355 -0.282
32 C34 C C34 R N N 0 4.253 -1.369 -2.083
33 O34 O O34 N N N 0 3.598 -1.09 -3.322
34 C24 C C24 R N N 0 3.271 -2.049 -1.123
35 N24 N N24 N N N 0 3.98 -2.467 0.094
36 C14 C C14 R N N 0 2.165 -1.056 -0.756
37 O33 O O33 N N N 0 1.228 -1.692 0.115
38 C54 C C54 S N N 0 3.519 0.781 -1.055
39 O54 O O54 N N N 0 2.731 0.076 -0.098
40 C64 C C64 N N N 0 3.99 2.105 -0.449
41 N64 N N64 N N N 0 2.831 2.974 -0.21
42 C15 C C15 R N N 0 6.834 -0.655 -0.732
43 C25 C C25 S N N 0 7.625 -1.304 0.407
44 C35 C C35 S N N 0 7.664 -0.344 1.6
45 C45 C C45 S N N 0 8.202 1.009 1.122
46 C55 C C55 R N N 0 7.369 1.484 -0.07
47 C65 C C65 N N N 0 7.879 2.851 -0.533
48 O25 O O25 N N N 0 8.957 -1.579 -0.03
49 O35 O O35 N N N 0 8.521 -0.87 2.614
50 O45 O O45 N N N 0 8.11 1.963 2.181
51 O55 O O55 N N N 0 7.48 0.549 -1.142
52 O65 O O65 N N N 0 7.027 3.353 -1.564
53 H11 H H11 N N N 0 -4.157 0.77 -1.17
54 H21 H H21 N N N 0 -3.682 3.204 -0.952
55 H211 H 1H21 N N N 0 -2.38 3.026 0.993
56 H212 H 2H21 N N N 0 -3.224 1.753 1.529
57 H311 H 1H31 N N N 0 -4.419 4.428 1.032
58 H312 H 2H31 N N N 0 -5.187 2.962 1.694
59 H41 H H41 N N N 0 -5.964 4.439 -0.864
60 H3 H H3 N N N 0 -6.706 5.317 1.12
61 H51 H H51 N N N 0 -7.053 1.867 0.367
62 H611 H 1H61 N N N 0 -8.793 3.382 -0.613
63 H612 H 2H61 N N N 0 -7.893 3.374 -2.149
64 H61 H H61 N N N 0 -9.569 1.811 -2.09
65 H12 H H12 N N N 0 -5.778 -3.564 1.561
66 H121 H 1H12 N N N 0 -7.265 -5.107 0.608
67 H122 H 2H12 N N N 0 -6.871 -4.667 -0.9
68 H62 H H62 N N N 0 -5.231 -2.883 -1.364
69 H2 H H2 N N N 0 -4.131 -4.724 -0.554
70 H52 H H52 N N N 0 -4.186 -1.667 1.233
71 H42 H H42 N N N 0 -5.984 -0.536 -0.958
72 H32 H H32 N N N 0 -6.531 -1.216 1.966
73 H321 H 1H32 N N N 0 -8.752 -0.642 1.288
74 H322 H 2H32 N N N 0 -7.728 0.61 1.365
75 H221 H 1H22 N N N 0 -7.577 -2.433 -0.63
76 H222 H 2H22 N N N 0 -8.098 -2.883 1.011
77 H13 H H13 N N N 0 -2.246 -2.632 0.196
78 H23 H H23 N N N 0 -1.196 -0.324 -1.452
79 H1 H H1 N N N 0 -1.262 -2.476 -2.234
80 H33 H H33 N N N 0 0.42 0.222 0.104
81 H43 H H43 N N N 0 -0.39 -2.001 1.984
82 H531 H 1H53 N N N 0 0.928 0.021 2.708
83 H532 H 2H53 N N N 0 -0.437 1.049 2.208
84 H53 H H53 N N N 0 -0.481 0.533 4.441
85 H44 H H44 N N N 0 5.345 0.49 -2.16
86 H34 H H34 N N N 0 5.105 -2.026 -2.26
87 H4 H H4 N N N 0 3.302 -1.939 -3.679
88 H24 H H24 N N N 0 2.832 -2.921 -1.607
89 H242 H 2H24 N N N 0 4.624 -3.193 -0.181
90 H241 H 1H24 N N N 0 3.294 -2.9 0.694
91 H14 H H14 N N N 0 1.655 -0.731 -1.662
92 H54 H H54 N N N 0 2.918 0.982 -1.942
93 H11A H 1H1 N N N 0 4.677 2.596 -1.139
94 H12A H 2H1 N N N 0 4.5 1.911 0.495
95 H25 H H25 N N N 0 7.138 -2.234 0.702
96 H641 H 1H64 N N N 0 3.187 3.831 0.187
97 H642 H 2H64 N N N 0 2.454 3.21 -1.116
98 H15 H H15 N N N 0 6.782 -1.343 -1.576
99 H35 H H35 N N N 0 6.658 -0.217 2.0
100 H45 H H45 N N N 0 9.244 0.901 0.819
101 H55 H H55 N N N 0 6.324 1.57 0.229
102 H651 H 1H65 N N N 0 7.877 3.543 0.309
103 H652 H 2H65 N N N 0 8.893 2.749 -0.918
104 H7 H H7 N N N 0 8.886 -2.185 -0.78
105 H6 H H6 N N N 0 8.146 -1.719 2.885
106 H5 H H5 N N N 0 8.648 1.625 2.91
107 H65 H H65 N N N 0 7.382 4.213 -1.827