Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LIY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 62


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 -1.541 -1.313 1.828
2 N3 N N3 N N N 0 -0.196 0.553 2.374
3 C4 C C4 N Y N 0 -0.231 -0.257 0.107
4 C6 C C6 N N N 0 -0.34 -1.177 -2.218
5 C7 C C7 N Y N 0 2.066 0.521 -0.269
6 C8 C C8 N Y N 0 2.953 1.511 -0.675
7 C10 C C10 N Y N 0 1.093 3.025 -1.199
8 C13 C C13 N N N 0 3.492 3.784 -1.566
9 C15 C C15 S N N 0 1.546 5.281 -2.173
10 C17 C C17 N N N 0 -1.413 4.93 -0.428
11 C20 C C20 N N N 0 -1.267 -0.312 -3.065
12 C21 C C21 N Y N 0 1.664 5.305 -3.692
13 C22 C C22 N Y N 0 1.788 6.522 -4.356
14 C24 C C24 N Y N 0 1.88 5.349 -6.466
15 C26 C C26 N Y N 0 1.647 4.11 -4.405
16 C1 C C1 N Y N 0 -0.673 -0.369 1.409
17 C3 C C3 N Y N 0 -0.737 -1.189 -0.777
18 N2 N N2 N Y N 0 -1.606 -2.159 -0.428
19 C2 C C2 N Y N 0 -1.961 -2.163 0.872
20 N4 N N4 N N N 0 -2.871 -3.165 1.274
21 C12 C C12 N Y N 0 0.701 0.767 -0.316
22 C11 C C11 N Y N 0 0.225 1.999 -0.775
23 C9 C C9 N Y N 0 2.481 2.757 -1.124
24 C14 C C14 N N N 0 2.909 5.187 -1.476
25 C23 C C23 N Y N 0 1.896 6.544 -5.746
26 C25 C C25 N Y N 0 1.755 4.133 -5.796
27 N5 N N5 N N N 0 0.621 4.249 -1.674
28 C16 C C16 N N N 0 -0.811 4.517 -1.765
29 C18 C C18 N N N 0 -0.794 6.208 0.128
30 O1 O O1 N N N 0 -1.403 6.504 1.378
31 C19 C C19 N N N 0 -0.885 7.703 1.939
32 HN31 H 1HN3 N N N 0 0.421 0.229 3.085
33 HN32 H 2HN3 N N N 0 -0.563 1.48 2.375
34 H61 H 1H6 N N N 0 0.693 -0.814 -2.326
35 H62 H 2H6 N N N 0 -0.334 -2.202 -2.62
36 H7 H H7 N N N 0 2.435 -0.437 0.081
37 H8 H H8 N N N 0 4.022 1.312 -0.639
38 H131 H 1H13 N N N 0 4.388 3.733 -0.936
39 H132 H 2H13 N N N 0 3.795 3.56 -2.595
40 H15 H H15 N N N 0 1.124 6.261 -1.913
41 H171 H 1H17 N N N 0 -2.493 5.082 -0.548
42 H172 H 2H17 N N N 0 -1.303 4.124 0.308
43 H201 H 1H20 N N N 0 -2.299 -0.676 -3.017
44 H202 H 2H20 N N N 0 -0.953 -0.322 -4.113
45 H203 H 3H20 N N N 0 -1.261 0.727 -2.719
46 H22 H H22 N N N 0 1.802 7.457 -3.803
47 H24 H H24 N N N 0 1.964 5.367 -7.549
48 H26 H H26 N N N 0 1.55 3.158 -3.891
49 HN41 H 1HN4 N N N 0 -2.551 -3.902 1.868
50 HN42 H 2HN4 N N N 0 -3.79 -3.172 0.883
51 H11 H H11 N N N 0 -0.854 2.137 -0.799
52 H141 H 1H14 N N N 0 2.781 5.449 -0.417
53 H142 H 2H14 N N N 0 3.615 5.911 -1.898
54 H23 H H23 N N N 0 1.993 7.491 -6.268
55 H25 H H25 N N N 0 1.742 3.202 -6.356
56 H161 H 1H16 N N N 0 -1.285 3.598 -2.122
57 H162 H 2H16 N N N 0 -0.959 5.295 -2.52
58 H181 H 1H18 N N N 0 0.282 6.091 0.288
59 H182 H 2H18 N N N 0 -0.965 7.05 -0.55
60 H191 H 1H19 N N N 0 -0.049 7.464 2.6
61 H192 H 2H19 N N N 0 -1.673 8.213 2.499
62 H193 H 3H19 N N N 0 -0.536 8.351 1.132