Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LPC

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 78


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C0A C C0A N N N 0 -10.854 0.268 -1.29
2 C0B C C0B N N N 0 -12.082 1.378 0.446
3 C0C C C0C N N N 0 -9.771 1.907 0.087
4 N1 N N1 N N N 1 -10.773 0.833 0.064
5 C2 C C2 N N N 0 -10.384 -0.219 1.012
6 C3 C C3 N N N 0 -9.089 -0.881 0.537
7 O4 O O4 N N N 0 -8.018 0.063 0.607
8 P5 P P5 R N N 0 -6.694 -0.696 0.096
9 O5A O O5A N N N 0 -6.863 -1.083 -1.458
10 O5B O O5B N N N 0 -6.493 -1.928 0.891
11 O6 O O6 N N N 0 -5.419 0.27 0.272
12 C7 C C7 N N N 0 -4.267 -0.496 -0.085
13 C8 C C8 R N N 0 -3.013 0.369 0.062
14 O8 O O8 N N N 0 -3.061 1.441 -0.882
15 C9 C C9 N N N 0 -1.771 -0.485 -0.2
16 OQ1 O OQ1 N N N 0 0.737 -1.392 -0.471
17 OQ2 O OQ2 N N N 0 -0.579 0.304 0.055
18 CA C CA N N N 0 0.636 -0.243 -0.111
19 CB C CB N N N 0 1.873 0.576 0.153
20 CC C CC N N N 0 3.115 -0.278 -0.108
21 CD C CD N N N 0 4.371 0.554 0.16
22 CE C CE N N N 0 5.614 -0.3 -0.102
23 CF C CF N N N 0 6.87 0.531 0.166
24 CG C CG N N N 0 8.112 -0.323 -0.095
25 CH C CH N N N 0 9.368 0.509 0.173
26 CI C CI N N N 0 10.61 -0.345 -0.089
27 CJ C CJ N N N 0 11.866 0.486 0.179
28 CK C CK N N N 0 13.109 -0.368 -0.082
29 CL C CL N N N 0 14.365 0.464 0.186
30 CM C CM N N N 0 15.607 -0.39 -0.076
31 CN C CN N N N 0 16.863 0.442 0.192
32 H0A1 H 1H0A N N N 0 -11.597 -0.529 -1.307
33 H0A2 H 2H0A N N N 0 -11.142 1.049 -1.993
34 H0A3 H 3H0A N N N 0 -9.882 -0.136 -1.573
35 H0B1 H 1H0B N N N 0 -12.022 1.797 1.45
36 H0B2 H 2H0B N N N 0 -12.371 2.159 -0.257
37 H0B3 H 3H0B N N N 0 -12.826 0.581 0.429
38 H0C1 H 1H0C N N N 0 -8.85 1.556 -0.38
39 H0C2 H 2H0C N N N 0 -10.149 2.77 -0.462
40 H0C3 H 3H0C N N N 0 -9.568 2.194 1.119
41 H21 H 1H2 N N N 0 -11.175 -0.967 1.068
42 H22 H 2H2 N N N 0 -10.228 0.219 1.997
43 H31 H 1H3 N N N 0 -9.209 -1.217 -0.493
44 H32 H 2H3 N N N 0 -8.862 -1.736 1.174
45 HO5A H AHO5 N N N 0 -6.992 -0.254 -1.94
46 H71 H 1H7 N N N 0 -4.359 -0.83 -1.118
47 H72 H 2H7 N N N 0 -4.189 -1.363 0.572
48 H8 H H8 N N N 0 -2.969 0.776 1.072
49 HO8 H HO8 N N N 0 -3.1 1.039 -1.76
50 H91 H 1H9 N N N 0 -1.771 -0.819 -1.237
51 H92 H 2H9 N N N 0 -1.78 -1.352 0.461
52 HB1 H 1HB N N N 0 1.873 0.91 1.191
53 HB2 H 2HB N N N 0 1.882 1.443 -0.507
54 HC1 H 1HC N N N 0 3.115 -0.611 -1.146
55 HC2 H 2HC N N N 0 3.106 -1.145 0.552
56 HD1 H 1HD N N N 0 4.372 0.888 1.197
57 HD2 H 2HD N N N 0 4.381 1.421 -0.501
58 HE1 H 1HE N N N 0 5.613 -0.634 -1.139
59 HE2 H 2HE N N N 0 5.604 -1.167 0.559
60 HF1 H 1HF N N N 0 6.87 0.865 1.204
61 HF2 H 2HF N N N 0 6.879 1.398 -0.494
62 HG1 H 1HG N N N 0 8.112 -0.656 -1.133
63 HG2 H 2HG N N N 0 8.102 -1.19 0.565
64 HH1 H 1HH N N N 0 9.368 0.843 1.21
65 HH2 H 2HH N N N 0 9.378 1.376 -0.488
66 HI1 H 1HI N N N 0 10.61 -0.679 -1.126
67 HI2 H 2HI N N N 0 10.601 -1.212 0.572
68 HJ1 H 1HJ N N N 0 11.867 0.82 1.217
69 HJ2 H 2HJ N N N 0 11.876 1.353 -0.481
70 HK1 H 1HK N N N 0 13.108 -0.701 -1.12
71 HK2 H 2HK N N N 0 13.099 -1.235 0.578
72 HL1 H 1HL N N N 0 14.365 0.798 1.223
73 HL2 H 2HL N N N 0 14.374 1.331 -0.475
74 HM1 H 1HM N N N 0 15.607 -0.724 -1.113
75 HM2 H 2HM N N N 0 15.598 -1.257 0.585
76 HN1 H 1HN N N N 0 16.873 1.309 -0.468
77 HN2 H 2HN N N N 0 16.863 0.775 1.23
78 HN3 H 3HN N N N 0 17.748 -0.167 0.006