Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LVT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 96


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 0.478 3.906 -0.477
2 C2 C C2 N Y N 0 3.412 -2.991 1.17
3 C3 C C3 N Y N 0 2.475 -3.644 0.393
4 C4 C C4 N Y N 0 1.194 -3.131 0.268
5 C5 C C5 N Y N 0 0.854 -1.959 0.925
6 C6 C C6 N Y N 0 1.795 -1.309 1.711
7 O1 O O1 N N N 0 0.178 -1.45 -2.062
8 C7 C C7 N Y N 0 3.071 -1.821 1.826
9 C10 C C8 N Y N 0 2.791 3.409 0.344
10 C11 C C9 N Y N 0 3.688 2.631 1.055
11 C12 C C10 N Y N 0 3.246 1.507 1.729
12 C13 C C11 N Y N 0 1.911 1.16 1.693
13 O3 O O2 N N N 0 -4.584 -4.081 1.377
14 C21 C C12 N N N 0 -2.469 1.308 1.934
15 C14 C C13 N Y N 0 1.01 1.935 0.978
16 O2 O O3 N N N 0 -5.735 -2.091 0.396
17 C16 C C14 N N N 0 1.421 -0.05 2.446
18 C17 C C15 N N N 0 0.19 -3.861 -0.583
19 C18 C C16 N N N 0 1.838 -1.387 -3.791
20 C19 C C17 N N N 0 0.453 -1.841 -3.409
21 C20 C C18 N N N 0 0.375 2.07 -3.507
22 C15 C C19 N Y N 0 1.456 3.061 0.3
23 S2 S S2 N N N 0 5.04 -3.647 1.325
24 C22 C C20 N N N 0 1.762 1.759 -4.007
25 C23 C C21 N N N 0 -1.074 1.848 2.119
26 C24 C C22 N N N 0 -1.316 -1.707 1.862
27 C25 C C23 N Y N 0 -1.05 -3.037 -0.783
28 C26 C C24 N Y N 0 -1.0 -1.867 -1.527
29 C27 C C25 N Y N 0 -2.157 -1.124 -1.723
30 C28 C C26 N Y N 0 -3.349 -1.549 -1.172
31 C29 C C27 N Y N 0 -3.396 -2.712 -0.427
32 C43 C C31 N Y N 0 -2.052 1.337 -1.625
33 C30 C C28 N Y N 0 -2.248 -3.453 -0.233
34 C31 C C29 N N N 0 -2.684 -1.204 1.48
35 C42 C C30 N N N 0 -2.107 0.142 -2.537
36 C44 C C32 N Y N 0 -0.862 2.039 -1.477
37 C45 C C33 N Y N 0 -0.814 3.144 -0.641
38 C46 C C34 N Y N 0 -1.945 3.547 0.039
39 C47 C C35 N Y N 0 -3.127 2.846 -0.105
40 C48 C C36 N Y N 0 -3.178 1.74 -0.935
41 O23 O O9 N N N 0 -3.279 1.163 2.995
42 O17 O O4 N N N 0 -0.305 1.593 0.942
43 O19 O O5 N N N 0 2.559 -0.883 -2.962
44 O20 O O6 N N N 0 2.272 -1.543 -5.051
45 O21 O O7 N N N 0 0.251 1.643 -2.149
46 O22 O O8 N N N 0 -2.859 1.006 0.831
47 O24 O O10 N N N 0 2.573 1.258 -3.265
48 O25 O O11 N N N 0 5.634 3.863 -0.054
49 O26 O O12 N N N 0 5.588 3.991 2.299
50 O27 O O13 N N N 0 6.108 1.879 1.391
51 O28 O O14 N N N 0 2.096 2.039 -5.277
52 O30 O O15 N N N 0 -4.115 4.101 1.892
53 O31 O O16 N N N 0 -5.308 4.347 -0.126
54 O32 O O17 N N N 0 -5.403 2.215 0.875
55 O33 O O18 N N N 0 -2.86 -0.694 0.399
56 O34 O O19 N N N 0 -3.707 -1.321 2.342
57 O35 O O20 N N N 0 5.878 -3.043 0.207
58 O36 O O21 N N N 0 5.565 -3.134 2.542
59 O37 O O22 N N N 0 4.941 -5.037 1.046
60 O4 O O23 N N N 0 -5.597 -4.146 -0.751
61 O5 O O24 N N N 0 -0.398 -1.447 0.798
62 S1 S S1 N N N 0 -4.92 -3.249 0.275
63 S24 S S3 N N N 0 5.393 3.072 1.102
64 S29 S S4 N N N 0 -4.569 3.361 0.767
65 H1 H H1 N N N 0 0.287 4.833 0.064
66 H2 H H2 N N N 0 0.892 4.136 -1.458
67 H3 H H3 N N N 0 2.741 -4.557 -0.118
68 H4 H H4 N N N 0 3.805 -1.309 2.431
69 H5 H H5 N N N 0 3.136 4.29 -0.176
70 H6 H H6 N N N 0 3.947 0.901 2.283
71 H7 H H7 N N N 0 0.337 0.002 2.545
72 H8 H H8 N N N 0 1.872 -0.064 3.438
73 H9 H H9 N N N 0 0.635 -4.08 -1.553
74 H10 H H10 N N N 0 -0.079 -4.797 -0.094
75 H11 H H11 N N N 0 0.389 -2.925 -3.493
76 H12 H H12 N N N 0 -0.277 -1.381 -4.077
77 H13 H H13 N N N 0 0.198 3.144 -3.568
78 H14 H H14 N N N 0 -0.359 1.546 -4.121
79 H15 H H15 N N N 0 -1.121 2.922 2.297
80 H16 H H16 N N N 0 -0.605 1.358 2.972
81 H17 H H17 N N N 0 -0.98 -1.197 2.765
82 H18 H H18 N N N 0 -1.363 -2.781 2.047
83 H19 H H19 N N N 0 -4.248 -0.97 -1.322
84 H20 H H20 N N N 0 -2.285 -4.36 0.351
85 H21 H H21 N N N 0 -1.222 0.13 -3.172
86 H22 H H22 N N N 0 -2.998 0.205 -3.162
87 H23 H H23 N N N 0 -1.906 4.411 0.686
88 H24 H H24 N N N 0 -4.101 1.191 -1.043
89 H25 H H25 N N N 0 3.168 -1.237 -5.249
90 H26 H H26 N N N 0 -4.164 0.813 2.827
91 H27 H H27 N N N 0 2.998 1.822 -5.551
92 H28 H H28 N N N 0 -4.565 -0.983 2.052
93 H29 H H29 N N N 0 6.498 4.295 2.418
94 H30 H H30 N N N 0 -6.123 4.695 0.262
95 H31 H H31 N N N 0 6.798 -3.339 0.201
96 H32 H H32 N N N 0 -6.451 -4.498 -0.463