Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LYS

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 25


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 1.422 1.796 0.198
2 CA C CA S N N 0 1.394 0.355 0.484
3 C C C N N N 0 2.657 -0.284 -0.032
4 O O O N N N 0 3.316 0.275 -0.876
5 CB C CB N N N 0 0.184 -0.278 -0.206
6 CG C CG N N N 0 -1.102 0.282 0.407
7 CD C CD N N N 0 -2.313 -0.351 -0.283
8 CE C CE N N N 0 -3.598 0.208 0.329
9 NZ N NZ N N N 1 -4.761 -0.4 -0.332
10 OXT O OXT N N Y 0 3.05 -1.476 0.446
11 H H H N N N 0 1.489 1.891 -0.804
12 H2 H HN2 N N Y 0 0.521 2.162 0.464
13 HA H HA N N N 0 1.322 0.2 1.56
14 HB2 H 1HB N N N 0 0.21 -0.047 -1.27
15 HB3 H 2HB N N N 0 0.211 -1.359 -0.068
16 HG2 H 1HG N N N 0 -1.128 0.05 1.471
17 HG3 H 2HG N N N 0 -1.13 1.363 0.269
18 HD2 H 1HD N N N 0 -2.287 -0.12 -1.348
19 HD3 H 2HD N N N 0 -2.285 -1.432 -0.145
20 HE2 H 1HE N N N 0 -3.625 -0.023 1.394
21 HE3 H 2HE N N N 0 -3.626 1.289 0.192
22 HZ1 H 1HZ N N N 0 -4.736 -0.185 -1.318
23 HZ2 H 2HZ N N N 0 -4.735 -1.4 -0.205
24 HZ3 H 3HZ N N N 0 -5.609 -0.031 0.071
25 HXT H HXT N N Y 0 3.861 -1.886 0.115