Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : M28

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 26


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 1.8 -1.079 2.676
2 C2 C C2 N Y N 0 0.764 -0.484 1.955
3 C3 C C3 N Y N 0 0.807 -0.463 0.561
4 C4 C C4 N Y N 0 1.885 -1.036 -0.112
5 C5 C C5 N Y N 0 2.921 -1.631 0.608
6 C6 C C6 N Y N 0 2.878 -1.652 2.002
7 S S S N N N 0 1.746 -1.105 4.421
8 O1 O O1 N N N 0 3.109 -1.224 4.92
9 O2 O O2 N N N 0 0.903 -0.008 4.874
10 N3 N N3 N N N 0 0.926 -2.578 4.699
11 C7 C C7 N N N 0 1.931 -1.014 -1.603
12 C8 C C8 N N N 0 1.272 -2.233 -2.259
13 C9 C C9 N N N 0 1.376 -2.18 -3.764
14 O4 O O4 N N N 0 1.931 -1.278 -4.377
15 O5 O O5 N N N 0 0.764 -3.226 -4.372
16 H2 H H2 N N N 0 -0.081 -0.034 2.47
17 H3 H H3 N N N 0 -0.005 0.003 0.008
18 H5 H H5 N N N 0 3.765 -2.081 0.092
19 H6 H H6 N N N 0 3.69 -2.119 2.554
20 HN31 H 1HN3 N N N 0 1.466 -3.366 5.077
21 HN32 H 2HN3 N N N 0 -0.041 -2.534 5.043
22 H71 H 1H7 N N N 0 1.463 -0.093 -1.991
23 H72 H 2H7 N N N 0 2.982 -0.964 -1.934
24 H81 H 1H8 N N N 0 1.774 -3.155 -1.939
25 HO5 H HO5 N N N 0 0.791 -3.219 -5.352
26 H82 H 2H8 N N N 0 0.225 -2.343 -1.955