Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : MA9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C5 C C5 N Y N 0 4.152 -6.335 -1.972
2 C6 C C6 N Y N 0 5.458 -5.855 -2.067
3 C7 C C7 N Y N 0 5.934 -4.939 -1.13
4 C8 C C8 N Y N 0 5.105 -4.503 -0.097
5 C10 C C10 N Y N 0 2.938 -4.528 1.07
6 C15 C C15 N N N 0 -0.864 -0.456 0.502
7 C17 C C17 N Y N 0 -1.618 1.785 1.357
8 C21 C C21 N Y N 0 -2.289 4.389 0.639
9 C24 C C24 N Y N 0 -2.909 2.253 1.583
10 C26 C C26 S N N 0 -0.107 0.284 2.79
11 C28 C C28 N N N 0 0.23 -1.178 3.124
12 F25 F F25 N N N 0 -3.834 1.463 2.144
13 C23 C C23 N Y N 0 -3.245 3.558 1.223
14 F22 F F22 N N N 0 -2.612 5.642 0.294
15 C19 C C19 N Y N 0 -0.997 3.915 0.415
16 F F F N N N 0 -0.079 4.713 -0.146
17 C18 C C18 N Y N 0 -0.66 2.61 0.774
18 C16 C C16 S N N 0 -1.248 0.362 1.747
19 C14 C C14 N N N 0 -0.517 -1.9 0.858
20 N27 N N27 N N N 0 -0.476 0.994 4.019
21 N N N N N N 0 0.517 -1.934 1.896
22 C12 C C12 N Y N 0 1.344 -3.058 2.009
23 C11 C C11 N Y N 0 2.137 -3.415 0.918
24 N29 N N29 N Y N 0 1.362 -3.778 3.168
25 C30 C C30 N Y N 0 2.186 -4.843 3.192
26 N31 N N31 N Y N 0 2.988 -5.269 2.197
27 C9 C C9 N Y N 0 3.796 -4.982 0.001
28 C32 C C32 N Y N 0 3.322 -5.899 -0.939
29 S S S N N N 0 3.555 -7.482 -3.145
30 O O O N N N 0 4.699 -8.189 -3.704
31 O4 O O4 N N N 0 2.459 -8.237 -2.553
32 C C C N N N 0 2.855 -6.474 -4.432
33 H6 H H6 N N N 0 6.113 -6.188 -2.868
34 H7 H H7 N N N 0 6.951 -4.565 -1.205
35 H8 H H8 N N N 0 5.491 -3.788 0.626
36 H151 H 1H15 N N N 0 -0.003 0.013 0.005
37 H152 H 2H15 N N N 0 -1.686 -0.45 -0.224
38 H26 H H26 N N N 0 0.787 0.772 2.379
39 H281 H 1H28 N N N 0 1.102 -1.201 3.792
40 H282 H 2H28 N N N 0 -0.6 -1.661 3.656
41 H23 H H23 N N N 0 -4.251 3.928 1.398
42 H18 H H18 N N N 0 0.349 2.249 0.595
43 H16 H H16 N N N 0 -2.158 -0.076 2.179
44 H141 H 1H14 N N N 0 -1.409 -2.433 1.21
45 H142 H 2H14 N N N 0 -0.164 -2.41 -0.047
46 H271 H 1H27 N N N 0 -0.22 1.951 4.096
47 H272 H 2H27 N N N 0 -0.778 0.45 4.795
48 H11 H H11 N N N 0 2.117 -2.838 0.001
49 H30 H H30 N N N 0 2.206 -5.419 4.109
50 H32 H H32 N N N 0 2.304 -6.276 -0.868
51 H1 H 1H N N N 0 3.095 -5.431 -4.221
52 H2 H 2H N N N 0 3.288 -6.781 -5.385
53 H3 H 3H N N N 0 1.774 -6.624 -4.437