Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : MG7

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 37


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N9 N N9 N Y N 0 -0.104 0.401 0.114
2 C8 C C8 N Y N 0 -0.271 1.702 -0.263
3 N7 N N7 N Y N 1 -1.539 1.963 -0.396
4 C5 C C5 N Y N 0 -2.258 0.851 -0.108
5 C6 C C6 N N N 0 -3.64 0.549 -0.091
6 O6 O O6 N N N 0 -4.469 1.398 -0.37
7 N1 N N1 N N N 0 -4.019 -0.703 0.247
8 C2 C C2 N N N 0 -3.084 -1.645 0.558
9 N2 N N2 N N N 0 -3.498 -2.909 0.897
10 N3 N N3 N N N 0 -1.797 -1.378 0.541
11 C4 C C4 N Y N 0 -1.347 -0.161 0.216
12 O5' O O5' N N N 0 4.817 1.746 1.407
13 C5' C C5' N N N 0 4.572 1.041 0.188
14 C4' C C4' R N N 0 3.451 0.023 0.404
15 O4' O O4' N N N 0 2.201 0.699 0.666
16 C1' C C1' R N N 0 1.174 -0.271 0.365
17 CN7 C CN7 N N N 0 -2.1 3.258 -0.788
18 C2' C C2' R N N 0 1.665 -0.986 -0.913
19 O2' O O2' N N N 0 1.341 -2.377 -0.873
20 C3' C C3' S N N 0 3.199 -0.786 -0.888
21 O3' O O3' N N N 0 3.868 -2.047 -0.828
22 H8 H H8 N N N 0 0.529 2.409 -0.426
23 HN1 H HN1 N N N 0 -4.961 -0.933 0.27
24 HN21 H 1HN2 N N N 0 -2.844 -3.59 1.121
25 HN22 H 2HN2 N N N 0 -4.444 -3.121 0.914
26 HO5' H 'HO5 N N N 0 5.528 2.376 1.227
27 H5'1 H 1H5' N N N 0 5.479 0.522 -0.12
28 H5'2 H 2H5' N N N 0 4.276 1.748 -0.587
29 H4' H H4' N N N 0 3.7 -0.646 1.228
30 H1' H H1' N N N 0 1.073 -0.984 1.183
31 H71 H 1H7 N N N 0 -2.194 3.299 -1.873
32 H72 H 2H7 N N N 0 -3.084 3.38 -0.334
33 H73 H 3H7 N N N 0 -1.442 4.057 -0.45
34 H2' H H2' N N N 0 1.234 -0.52 -1.8
35 HO2' H 'HO2 N N N 0 1.726 -2.777 -1.665
36 H3' H H3' N N N 0 3.526 -0.222 -1.761
37 HO3' H 'HO3 N N N 0 4.813 -1.858 -0.752