Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : MPM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C4 N Y N 0 -0.358 1.183 0.039
2 C3 C C3 N Y N 0 0.259 2.445 0.018
3 C5 C C5 N Y N 0 -1.756 1.133 0.003
4 C4A C C4A N N N 0 0.446 -0.054 0.092
5 C2 C C2 N Y N 0 -0.539 3.579 -0.032
6 C6 C C6 N Y N 0 -2.468 2.313 -0.041
7 O1 O O1 N N N 0 1.611 2.553 0.046
8 C5A C C5A N N N 0 -2.474 -0.193 0.023
9 N2 N N2 N N N 0 1.737 0.014 0.119
10 N1 N N1 N Y N 0 -1.852 3.479 -0.059
11 C2A C C2A N N N 0 0.105 4.941 -0.056
12 O2 O O2 N N N 0 -3.885 0.03 -0.009
13 C C C R N N 0 2.534 -1.213 0.171
14 P1 P P1 N N N 0 -4.585 -1.42 0.014
15 CA2 C CA2 N N N 0 2.235 -2.069 -1.062
16 CA1 C CA1 N N N 0 2.179 -1.999 1.435
17 P2 P P2 N N N 0 4.306 -0.786 0.199
18 O3 O O3 N N N 0 -4.057 -2.241 -1.098
19 O5 O O5 N N N 0 -4.267 -2.147 1.416
20 O4 O O4 N N N 0 -6.177 -1.25 -0.153
21 O8 O O8 N N N 0 4.674 -0.116 1.616
22 O6 O O6 N N N 0 5.183 -2.12 -0.008
23 O7 O O7 N N N 0 4.6 0.171 -0.891
24 CA3 C CA3 N N N 0 2.705 -1.333 -2.319
25 H4AC H CH4A N N N 0 -0.045 -1.016 0.107
26 HC6 H HC6 N N N 0 -3.548 2.282 -0.064
27 HO1 H HO1 N N N 0 1.911 2.55 -0.874
28 H5A1 H 1H5A N N N 0 -2.178 -0.779 -0.846
29 H5A2 H 2H5A N N N 0 -2.212 -0.734 0.933
30 H2A1 H 1H2A N N N 0 0.283 5.241 -1.089
31 H2A2 H 2H2A N N N 0 -0.556 5.664 0.423
32 H2A3 H 3H2A N N N 0 1.053 4.905 0.481
33 HA21 H 1HA2 N N N 0 1.162 -2.25 -1.127
34 HA22 H 2HA2 N N N 0 2.76 -3.02 -0.98
35 HA11 H 1HA1 N N N 0 2.772 -2.913 1.474
36 HA12 H 2HA1 N N N 0 2.392 -1.39 2.313
37 HA13 H 3HA1 N N N 0 1.119 -2.254 1.418
38 HO5 H HO5 N N N 0 -4.627 -1.581 2.112
39 HO4 H HO4 N N N 0 -6.557 -2.139 -0.133
40 HO8 H HO8 N N N 0 4.469 -0.771 2.297
41 HO6 H HO6 N N N 0 6.112 -1.851 0.013
42 HA31 H 1HA3 N N N 0 3.778 -1.152 -2.254
43 HA32 H 2HA3 N N N 0 2.492 -1.943 -3.197
44 HA33 H 3HA3 N N N 0 2.181 -0.382 -2.401