Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : MT5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 9.998 -0.832 0.259
2 C2 C C2 N N N 0 8.828 0.152 0.321
3 C3 C C3 N N N 0 7.513 -0.605 0.121
4 C4 C C4 N N N 0 6.344 0.38 0.183
5 C5 C C5 N N N 0 5.029 -0.377 -0.017
6 C6 C C6 N N N 0 3.859 0.607 0.044
7 C7 C C7 N N N 0 2.545 -0.15 -0.156
8 C8 C C8 N N N 0 1.375 0.835 -0.094
9 N9 N N9 N N N 1 0.116 0.11 -0.285
10 C10 C C10 N N N 0 -1.016 0.756 -0.27
11 N11 N N11 N N N 0 -1.118 2.109 -0.082
12 C12 C C12 N N N 0 -2.53 2.504 -0.194
13 C13 C C13 R N N 0 -3.267 1.204 -0.545
14 N14 N N14 N N N 0 -2.228 0.16 -0.445
15 C15 C C15 R N N 0 -2.539 -1.276 -0.48
16 O16 O O16 N N N 0 -2.982 -1.646 -1.787
17 C17 C C17 R N N 0 -3.656 -1.529 0.543
18 O18 O O18 N N N 0 -4.128 -2.871 0.409
19 C19 C C19 S N N 0 -4.81 -0.556 0.297
20 O20 O O20 N N N 0 -5.87 -0.84 1.213
21 C21 C C21 R N N 0 -4.34 0.891 0.502
22 O22 O O22 N N N 0 -5.447 1.78 0.333
23 H11 H H11 N N N 0 -0.378 2.71 0.097
24 H121 H H121 N N N 0 -2.891 2.901 0.754
25 H122 H H122 N N N 0 -2.657 3.239 -0.989
26 H13 H H13 N N N 0 -3.685 1.246 -1.551
27 H21 H H21 N N N 0 -3.922 1.011 1.501
28 H17 H H17 N N N 0 -3.266 -1.38 1.55
29 H18 H H18 N N N 0 -3.449 -3.543 0.555
30 H19 H H19 N N N 0 -5.173 -0.678 -0.723
31 H20 H H20 N N N 0 -6.227 -1.735 1.136
32 H22 H H22 N N N 0 -6.165 1.638 0.965
33 H1 H H1 N N N 0 10.934 -0.293 0.402
34 H2 H H2 N N N 0 9.885 -1.58 1.045
35 H3 H H3 N N N 0 10.007 -1.326 -0.713
36 H9 H H9 N N N 0 0.126 -0.85 -0.424
37 H23 H H23 N N N 0 8.819 0.645 1.293
38 H24 H H24 N N N 0 8.94 0.899 -0.465
39 H31 H H31 N N N 0 7.522 -1.098 -0.851
40 H32 H H32 N N N 0 7.401 -1.352 0.907
41 H41 H H41 N N N 0 6.335 0.873 1.155
42 H42 H H42 N N N 0 6.456 1.127 -0.603
43 H51 H H51 N N N 0 5.038 -0.87 -0.989
44 H52 H H52 N N N 0 4.917 -1.125 0.768
45 H61 H H61 N N N 0 3.851 1.1 1.016
46 H62 H H62 N N N 0 3.972 1.354 -0.741
47 H71 H H71 N N N 0 2.554 -0.643 -1.128
48 H72 H H72 N N N 0 2.433 -0.897 0.63
49 H81 H H81 N N N 0 1.366 1.328 0.878
50 H82 H H82 N N N 0 1.487 1.582 -0.879
51 H15 H H15 N N N 0 -1.653 -1.853 -0.212
52 H16 H H16 N N N 0 -3.203 -2.583 -1.877