Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : MZD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 96


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 9.092 2.16 -0.29
2 C13 C C2 N N N 0 5.592 0.934 -1.429
3 C15 C C3 R N N 0 4.931 -1.491 -1.714
4 C17 C C4 N N N 0 3.591 -1.162 -1.111
5 C20 C C5 N N N 0 -0.389 -1.961 -0.707
6 C22 C C6 N N N 0 -2.683 -1.715 0.076
7 C24 C C7 N N N 0 -5.082 -1.704 0.703
8 C26 C C8 N N N 0 -7.376 -1.459 1.486
9 O35 O O1 N N N 0 -8.933 1.592 -2.658
10 P34 P P1 N N N 0 -10.106 1.955 -1.617
11 O36 O O2 N N N 0 -10.526 3.498 -1.799
12 O37 O O3 N N N 0 -11.279 1.09 -1.873
13 O33 O O4 N N N 0 -9.582 1.716 -0.113
14 C32 C C9 N N N 0 -9.232 0.426 0.393
15 C29 C C10 N N N 0 -8.776 0.556 1.848
16 C30 C C11 N N N 0 -7.559 1.48 1.921
17 C31 C C12 N N N 0 -9.913 1.143 2.688
18 C27 C C13 R N N 0 -8.402 -0.825 2.39
19 O28 O O5 N N N 0 -9.568 -1.65 2.439
20 O38 O O6 N N N 0 -7.697 -2.364 0.746
21 N25 N N1 N N N 0 -6.102 -1.019 1.5
22 C23 C C14 N N N 0 -3.733 -1.01 0.896
23 O39 O O7 N N N 0 -2.985 -2.678 -0.597
24 N21 N N2 N N N 0 -1.409 -1.275 0.09
25 C19 C C15 N N N 0 0.961 -1.266 -0.515
26 S18 S S1 N N N 0 2.221 -2.113 -1.5
27 O40 O O8 N N N 0 3.481 -0.222 -0.351
28 C16 C C16 N N N 0 4.769 -1.384 -3.251
29 C41 C C17 N N N 0 5.288 -2.947 -1.422
30 C42 C C18 N N N 0 5.843 -3.141 -0.018
31 C43 C C19 N N N 0 7.048 -2.23 0.201
32 C44 C C20 R N N 0 6.611 -0.76 0.097
33 C45 C C21 N N N 0 5.6 -0.472 1.2
34 C07 C C22 S N N 0 7.847 0.116 0.232
35 C14 C C23 S N N 0 6.017 -0.528 -1.291
36 C11 C C24 R N N 0 6.858 1.803 -1.405
37 O12 O O9 N N N 0 6.486 3.18 -1.5
38 C08 C C25 R N N 0 7.652 1.573 -0.147
39 C02 C C26 S N N 0 9.583 2.007 1.179
40 C01 C C27 N N N 0 10.749 2.936 1.531
41 O06 O O10 N N N 0 9.906 0.601 1.331
42 C05 C C28 S N N 0 8.614 -0.052 1.539
43 C04 C C29 N N N 0 8.054 0.841 2.671
44 C03 C C30 S N N 0 8.318 2.251 2.057
45 C09 C C31 N N N 0 7.146 2.415 1.041
46 H1 H H1 N N N 0 9.681 1.56 -0.98
47 H2 H H2 N N N 0 9.049 3.204 -0.595
48 H3 H H3 N N N 0 5.086 1.092 -2.384
49 H4 H H4 N N N 0 4.93 1.237 -0.626
50 H5 H H5 N N N 0 -0.313 -2.999 -0.385
51 H6 H H6 N N N 0 -0.668 -1.927 -1.761
52 H7 H H7 N N N 0 -5.006 -2.743 1.025
53 H8 H H8 N N N 0 -5.361 -1.671 -0.35
54 H9 H H9 N N N 0 -8.131 2.121 -2.548
55 H10 H H10 N N N 0 -10.853 3.715 -2.683
56 H11 H H11 N N N 0 -10.1 -0.232 0.341
57 H12 H H12 N N N 0 -8.423 0.008 -0.205
58 H13 H H13 N N N 0 -7.855 2.493 1.652
59 H14 H H14 N N N 0 -7.159 1.474 2.934
60 H15 H H15 N N N 0 -6.795 1.129 1.227
61 H16 H H16 N N N 0 -10.76 0.458 2.682
62 H17 H H17 N N N 0 -9.57 1.288 3.712
63 H18 H H18 N N N 0 -10.217 2.102 2.268
64 H19 H H19 N N N 0 -7.988 -0.721 3.393
65 H20 H H20 N N N 0 -9.99 -1.785 1.58
66 H21 H H21 N N N 0 -5.861 -0.249 2.038
67 H22 H H22 N N N 0 -3.454 -1.044 1.949
68 H23 H H23 N N N 0 -3.809 0.028 0.573
69 H24 H H24 N N N 0 -1.168 -0.505 0.628
70 H25 H H25 N N N 0 0.884 -0.228 -0.837
71 H26 H H26 N N N 0 1.239 -1.3 0.539
72 H27 H H27 N N N 0 5.711 -1.642 -3.735
73 H28 H H28 N N N 0 3.99 -2.07 -3.583
74 H29 H H29 N N N 0 4.492 -0.364 -3.517
75 H30 H H30 N N N 0 4.387 -3.561 -1.541
76 H31 H H31 N N N 0 6.026 -3.287 -2.156
77 H35 H H35 N N N 0 7.802 -2.431 -0.56
78 H32 H H32 N N N 0 5.075 -2.969 0.729
79 H33 H H33 N N N 0 6.176 -4.185 0.085
80 H34 H H34 N N N 0 7.469 -2.411 1.189
81 H36 H H36 N N N 0 6.061 -0.654 2.171
82 H37 H H37 N N N 0 5.281 0.568 1.138
83 H38 H H38 N N N 0 4.735 -1.125 1.08
84 H39 H H39 N N N 0 8.552 -0.282 -0.552
85 H40 H H40 N N N 0 6.862 -0.666 -2.009
86 H41 H H41 N N N 0 7.478 1.545 -2.269
87 H42 H H42 N N N 0 6.001 3.402 -2.306
88 H43 H H43 N N N 0 10.447 3.972 1.378
89 H44 H H44 N N N 0 11.028 2.789 2.574
90 H45 H H45 N N N 0 11.601 2.707 0.891
91 H46 H H46 N N N 0 8.736 -1.093 1.836
92 H47 H H47 N N N 0 7.009 0.683 2.893
93 H48 H H48 N N N 0 8.645 0.713 3.591
94 H49 H H49 N N N 0 8.414 3.058 2.78
95 H50 H H50 N N N 0 7.04 3.469 0.756
96 H51 H H51 N N N 0 6.209 2.05 1.447