Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NA0

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 77


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PN P PN N N N 0 -2.613 -3.206 -0.835
2 O1N O O1N N N N 0 -3.186 -4.322 0.066
3 O2N O O2N N N N -1 -2.274 -3.79 -2.225
4 O5D O O5D N N N 0 -3.705 -2.034 -0.998
5 C5D C C5D N N N 0 -5.035 -2.268 -1.466
6 C4B C C4B S N N 0 3.344 -1.186 1.116
7 O4B O O4B N N N 0 3.565 -0.747 -0.234
8 C3B C C3B R N N 0 4.756 -1.478 1.682
9 O3B O O3B N N N 0 5.217 -2.769 1.278
10 C2B C C2B R N N 0 5.584 -0.351 1.006
11 O2B O O2B N N N 0 6.947 -0.749 0.843
12 C1B C C1B R N N 0 4.886 -0.209 -0.364
13 N9A N N9A N Y N 0 4.812 1.205 -0.739
14 C8A C C8A N Y N 0 3.761 2.045 -0.517
15 N7A N N7A N Y N 0 4.034 3.23 -0.98
16 C5A C C5A N Y N 0 5.274 3.227 -1.526
17 C6A C C6A N Y N 0 6.077 4.19 -2.159
18 N6A N N6A N N N 0 5.625 5.487 -2.332
19 N1A N N1A N Y N 0 7.283 3.828 -2.586
20 C2A C C2A N Y N 0 7.723 2.593 -2.425
21 N3A N N3A N Y N 0 7.005 1.658 -1.838
22 C4A C C4A N Y N 0 5.79 1.929 -1.373
23 O3 O O3 N N N 0 -1.278 -2.606 -0.165
24 PA P PA N N N 0 0.018 -3.264 0.528
25 O2A O O2A N N N 0 -0.371 -3.797 1.997
26 O1A O O1A N N N 0 0.498 -4.395 -0.296
27 O5B O O5B N N N 0 1.181 -2.157 0.65
28 C5B C C5B N N N 0 2.494 -2.458 1.128
29 C4D C C4D S N N 0 -5.804 -0.946 -1.5
30 O4D O O4D N N N 0 -5.996 -0.447 -0.167
31 C3D C C3D S N N 0 -7.233 -1.169 -2.057
32 O3D O O3D N N N 0 -7.772 -2.414 -1.607
33 C2D C C2D R N N 0 -7.988 0.03 -1.422
34 O2D O O2D N N N 0 -9.372 -0.276 -1.246
35 C1D C C1D R N N 0 -7.28 0.177 -0.057
36 N1N N N1N N Y N 1 -7.118 1.596 0.268
37 C2N C C2N N Y N 0 -7.959 2.159 1.11
38 C3N C C3N N Y N 0 -7.832 3.511 1.443
39 C7N C C7N N N N 0 -8.771 4.141 2.384
40 O7N O O7N N N N 0 -9.665 3.487 2.879
41 C4N C C4N N Y N 0 -6.794 4.256 0.863
42 C5N C C5N N Y N 0 -5.94 3.615 -0.015
43 C6N C C6N N Y N 0 -6.13 2.271 -0.287
44 P2B P P2B N N N 0 8.18 0.066 1.481
45 O2X O O2X N N N 0 9.567 -0.588 0.989
46 O1X O O1X N N N 0 8.118 1.478 1.043
47 O3X O O3X N N N 0 8.095 -0.002 3.087
48 H5B2 H H5B2 N N N 0 2.43 -2.842 2.146
49 CAA C CAA N N N 0 -8.623 5.6 2.733
50 H5B1 H H5B1 N N N 0 2.952 -3.208 0.484
51 H4B H H4B N N N 0 2.859 -0.4 1.695
52 H3B H H3B N N N 0 4.772 -1.38 2.768
53 H1B H H1B N N N 0 5.439 -0.765 -1.12
54 HA H HA N N N 0 4.665 -3.499 1.589
55 H2B H H2B N N N 0 5.518 0.575 1.577
56 H8A H H8A N N N 0 2.838 1.767 -0.03
57 H6A1 H H6A1 N N N 0 4.744 5.739 -2.016
58 H6A2 H H6A2 N N N 0 6.189 6.143 -2.771
59 H2A H H2A N N N 0 8.708 2.341 -2.787
60 H5D1 H H5D1 N N N 0 -4.997 -2.692 -2.47
61 H5D2 H H5D2 N N N 0 -5.538 -2.965 -0.796
62 H4D H H4D N N N 0 -5.271 -0.214 -2.105
63 H3D H H3D N N N 0 -7.244 -1.11 -3.145
64 H1D H H1D N N N 0 -7.866 -0.317 0.718
65 HB H HB N N N 0 -8.665 -2.596 -1.932
66 H2D H H2D N N N 0 -7.864 0.929 -2.025
67 HC H HC N N N 0 -9.841 -0.464 -2.071
68 HD H HD N N N 0 -8.753 1.571 1.548
69 H6N H H6N N N N 0 -5.46 1.768 -0.969
70 H4N H H4N N N N 0 -6.667 5.302 1.097
71 H5N H H5N N N N 0 -5.129 4.156 -0.48
72 H2X H H2X N N N 0 10.355 -0.147 1.336
73 HAA1 H HAA1 N N N 0 -9.204 6.201 2.035
74 HAA2 H HAA2 N N N 0 -8.985 5.769 3.747
75 H3X H H3X N N N 0 8.13 -0.9 3.445
76 HAA3 H HAA3 N N N 0 -7.573 5.883 2.67
77 H21 H H21 N N N 0 -0.695 -3.108 2.593