Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NAD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 71


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PA P AP S N N 0 -0.887 -0.813 -0.676
2 O1A O AO1 N N N 0 -1.258 0.102 -1.778
3 O2A O AO2 N N N 0 -0.249 -2.159 -1.287
4 O5B O AO5* N N N 0 -2.2 -1.182 0.18
5 C5B C AC5* N N N 0 -3.159 -1.706 -0.741
6 C4B C AC4* R N N 0 -4.437 -2.079 0.012
7 O4B O AO4* N N N 0 -5.068 -0.893 0.523
8 C3B C AC3* S N N 0 -5.434 -2.754 -0.95
9 O3B O AO3* N N N 0 -5.745 -4.078 -0.512
10 C2B C AC2* R N N 0 -6.693 -1.85 -0.881
11 O2B O AO2* N N N 0 -7.885 -2.638 -0.862
12 C1B C AC1* R N N 0 -6.493 -1.116 0.469
13 N9A N AN9 N Y N 0 -7.216 0.158 0.479
14 C8A C AC8 N Y N 0 -6.723 1.368 0.089
15 N7A N AN7 N Y N 0 -7.635 2.286 0.229
16 C5A C AC5 N Y N 0 -8.768 1.725 0.717
17 C6A C AC6 N Y N 0 -10.042 2.209 1.059
18 N6A N AN6 N N N 0 -10.352 3.55 0.916
19 N1A N AN1 N Y N 0 -10.942 1.348 1.524
20 C2A C AC2 N Y N 0 -10.655 0.067 1.663
21 N3A N AN3 N Y N 0 -9.476 -0.431 1.355
22 C4A C AC4 N Y N 0 -8.514 0.352 0.878
23 O3 O O3 N N N 0 0.191 -0.093 0.279
24 PN P NP N N N 0 1.204 0.707 -0.683
25 O1N O NO1 N N N 0 0.556 2.042 -1.115
26 O2N O NO2 N N N -1 1.509 -0.146 -1.934
27 O5D O NO5* N N N 0 2.573 1.007 0.109
28 C5D C NC5* N N N 0 3.469 1.61 -0.827
29 C4D C NC4* R N N 0 4.797 1.921 -0.135
30 O4D O NO4* N N N 0 5.467 0.698 0.241
31 C3D C NC3* S N N 0 5.767 2.618 -1.115
32 O3D O NO3* N N N 0 5.745 4.033 -0.921
33 C2D C NC2* R N N 0 7.154 2.04 -0.746
34 O2D O NO2* N N N 0 8.031 3.082 -0.314
35 C1D C NC1* R N N 0 6.854 1.062 0.411
36 N1N N NN1 N Y N 1 7.708 -0.125 0.31
37 C2N C NC2 N Y N 0 8.763 -0.222 1.093
38 C3N C NC3 N Y N 0 9.601 -1.335 1.017
39 C7N C NC7 N N N 0 10.789 -1.442 1.891
40 O7N O NO7 N N N 0 11.045 -0.553 2.68
41 N7N N NN7 N N N 0 11.588 -2.524 1.813
42 C4N C NC4 N Y N 0 9.296 -2.352 0.104
43 C5N C NC5 N Y N 0 8.173 -2.204 -0.69
44 C6N C NC6 N Y N 0 7.395 -1.067 -0.559
45 HOA2 H 2HOA N N N 0 -0.021 -2.726 -0.537
46 H51A H AH51 N N N 0 -3.388 -0.954 -1.495
47 H52A H AH52 N N N 0 -2.75 -2.594 -1.225
48 H4B H AH4* N N N 0 -4.2 -2.755 0.834
49 H3B H AH3* N N N 0 -5.033 -2.773 -1.963
50 HO3A H AHO3 N N N 0 -6.415 -4.423 -1.117
51 H2B H AH2* N N N 0 -6.711 -1.142 -1.71
52 HO2A H AHO2 N N N 0 -7.951 -3.066 -1.726
53 H1B H AH1* N N N 0 -6.815 -1.745 1.299
54 H8A H AH8 N N N 0 -5.724 1.54 -0.282
55 H61A H AH61 N N N 0 -9.686 4.168 0.576
56 H62A H AH62 N N N 0 -11.235 3.872 1.157
57 H2A H AH2 N N N 0 -11.416 -0.598 2.045
58 H51N H NH51 N N N 0 3.031 2.533 -1.206
59 H52N H NH52 N N N 0 3.643 0.924 -1.656
60 H4D H NH4* N N N 0 4.629 2.547 0.742
61 H3D H NH3* N N N 0 5.511 2.371 -2.145
62 HO3N H NHO3 N N N 0 6.367 4.412 -1.557
63 H2D H NH2* N N N 0 7.583 1.507 -1.594
64 HO2N H NHO2 N N N 0 8.13 3.691 -1.06
65 H1D H NH1* N N N 0 7.003 1.554 1.373
66 H2N H NH2 N N N 0 8.986 0.57 1.791
67 H5N H NH5 N N N 0 7.906 -2.967 -1.406
68 H71N H NH71 N N N 0 12.367 -2.594 2.386
69 H72N H NH72 N N N 0 11.382 -3.235 1.186
70 H4N H NH4 N N N 0 9.92 -3.229 0.023
71 H6N H NH6 N N N 0 6.518 -0.948 -1.178