Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : ND7

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1A O O1 N N N 0 -5.162 2.116 -1.302
2 PA P P1 N N N 0 -4.866 1.015 -0.165
3 O2A O O2 N N N 0 -4.789 1.679 1.156
4 N3A N N1 N N N 0 -6.104 -0.124 -0.15
5 O5' O O3 N N N 0 -3.467 0.283 -0.479
6 C5' C C1 N N N 0 -2.822 -0.594 0.447
7 C4' C C2 R N N 0 -1.52 -1.114 -0.165
8 C3' C C3 S N N 0 -0.868 -2.161 0.766
9 O3' O O4 N N N 0 -1.18 -3.484 0.328
10 C2' C C4 R N N 0 0.647 -1.889 0.633
11 O2' O O5 N N N 0 1.317 -3.037 0.109
12 C1' C C5 R N N 0 0.731 -0.711 -0.362
13 O4' O O6 N N N 0 -0.549 -0.05 -0.261
14 N9 N N2 N Y N 0 1.809 0.204 0.021
15 C4 C C6 N Y N 0 3.134 0.084 -0.315
16 C5 C C7 N Y N 0 3.784 1.183 0.271
17 C2 C C9 N Y N 0 5.146 -0.628 -1.168
18 N7 N N3 N Y N 0 2.84 1.904 0.922
19 C8 C C8 N Y N 0 1.679 1.334 0.771
20 N3 N N4 N Y N 0 3.848 -0.789 -1.02
21 N1 N N5 N Y N 0 5.8 0.389 -0.637
22 C6 C C10 N Y N 0 5.171 1.311 0.083
23 N6 N N6 N N N 0 5.865 2.374 0.636
24 H1 H H1 N N N 0 -5.991 2.598 -1.176
25 H2 H H2 N N N 0 -6.177 -0.591 -1.041
26 H3 H H3 N N N 0 -5.975 -0.789 0.598
27 H4 H H4 N N N 0 -2.6 -0.052 1.366
28 H5 H H5 N N N 0 -3.48 -1.434 0.671
29 H6 H H6 N N N 0 -1.71 -1.547 -1.148
30 H7 H H7 N N N 0 -1.195 -2.011 1.795
31 H8 H H8 N N N 0 -0.796 -4.181 0.877
32 H9 H H9 N N N 0 1.07 -1.608 1.598
33 H10 H H10 N N N 0 1.244 -3.824 0.667
34 H11 H H11 N N N 0 0.891 -1.081 -1.375
35 H15 H H15 N N N 0 6.822 2.451 0.499
36 H12 H H12 N N N 0 0.751 1.702 1.183
37 H13 H H13 N N N 0 5.697 -1.355 -1.747
38 H14 H H14 N N N 0 5.394 3.04 1.16