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PDBeChem : Atoms of Molecule
Molecule : NJP
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 78
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
O3 |
O |
O3 |
N |
N |
N |
0 |
1.159 |
-2.72 |
0.588 |
2 |
PA |
P |
PA |
N |
N |
N |
0 |
-0.116 |
-2.823 |
1.566 |
3 |
PN |
P |
PN |
N |
N |
N |
0 |
2.638 |
-3.355 |
0.608 |
4 |
N1A |
N |
N1A |
N |
Y |
N |
0 |
-8.36 |
1.41 |
-3.724 |
5 |
O1A |
O |
O1A |
N |
N |
N |
0 |
-0.826 |
-4.255 |
1.373 |
6 |
C1B |
C |
C1B |
R |
N |
N |
0 |
-4.736 |
0.343 |
-0.159 |
7 |
C1D |
C |
C1D |
R |
N |
N |
0 |
6.751 |
0.29 |
-1.323 |
8 |
N1N |
N |
N1N |
N |
Y |
N |
1 |
7.045 |
1.423 |
-0.442 |
9 |
O1N |
O |
O1N |
N |
N |
N |
0 |
3.161 |
-3.343 |
1.993 |
10 |
O1X |
O |
O1X |
N |
N |
N |
0 |
-8.199 |
1.782 |
0.527 |
11 |
C2A |
C |
C2A |
N |
Y |
N |
0 |
-7.668 |
2.248 |
-2.973 |
12 |
O2A |
O |
O2A |
N |
N |
N |
0 |
0.327 |
-2.677 |
2.97 |
13 |
C2B |
C |
C2B |
R |
N |
N |
0 |
-5.426 |
0.514 |
1.213 |
14 |
O2B |
O |
O2B |
N |
N |
N |
0 |
-5.833 |
1.871 |
1.403 |
15 |
P2B |
P |
P2B |
N |
N |
N |
0 |
-7.367 |
2.301 |
1.636 |
16 |
C2D |
C |
C2D |
R |
N |
N |
0 |
7.864 |
-0.783 |
-1.222 |
17 |
O2D |
O |
O2D |
N |
N |
N |
0 |
8.937 |
-0.492 |
-2.119 |
18 |
C2N |
C |
C2N |
N |
Y |
N |
0 |
7.565 |
2.516 |
-0.96 |
19 |
O2N |
O |
O2N |
N |
N |
N |
0 |
2.579 |
-4.872 |
0.07 |
20 |
O2X |
O |
O2X |
N |
N |
N |
0 |
-7.473 |
3.907 |
1.68 |
21 |
N3A |
N |
N3A |
N |
Y |
N |
0 |
-6.771 |
1.84 |
-2.101 |
22 |
C3B |
C |
C3B |
R |
N |
N |
0 |
-4.333 |
0.126 |
2.234 |
23 |
O3B |
O |
O3B |
N |
N |
N |
0 |
-4.03 |
1.232 |
3.087 |
24 |
C3D |
C |
C3D |
S |
N |
N |
0 |
7.116 |
-2.068 |
-1.654 |
25 |
O3D |
O |
O3D |
N |
N |
N |
0 |
7.362 |
-2.35 |
-3.033 |
26 |
C3N |
C |
C3N |
N |
Y |
N |
0 |
7.859 |
3.616 |
-0.152 |
27 |
O3X |
O |
O3X |
N |
N |
N |
0 |
-7.89 |
1.69 |
3.03 |
28 |
C4A |
C |
C4A |
N |
Y |
N |
0 |
-6.524 |
0.544 |
-1.939 |
29 |
C4B |
C |
C4B |
R |
N |
N |
0 |
-3.112 |
-0.233 |
1.358 |
30 |
O4B |
O |
O4B |
N |
N |
N |
0 |
-3.671 |
-0.603 |
0.079 |
31 |
C4D |
C |
C4D |
R |
N |
N |
0 |
5.628 |
-1.733 |
-1.43 |
32 |
O4D |
O |
O4D |
N |
N |
N |
0 |
5.568 |
-0.407 |
-0.877 |
33 |
C4N |
C |
C4N |
N |
Y |
N |
0 |
7.592 |
3.54 |
1.219 |
34 |
C5A |
C |
C5A |
N |
Y |
N |
0 |
-7.235 |
-0.389 |
-2.714 |
35 |
C5B |
C |
C5B |
N |
N |
N |
0 |
-2.349 |
-1.411 |
1.967 |
36 |
O5B |
O |
O5B |
N |
N |
N |
0 |
-1.162 |
-1.653 |
1.208 |
37 |
C5D |
C |
C5D |
N |
N |
N |
0 |
5.011 |
-2.734 |
-0.451 |
38 |
O5D |
O |
O5D |
N |
N |
N |
0 |
3.608 |
-2.487 |
-0.339 |
39 |
C5N |
C |
C5N |
N |
Y |
N |
0 |
7.042 |
2.366 |
1.717 |
40 |
C6A |
C |
C6A |
N |
Y |
N |
0 |
-8.182 |
0.096 |
-3.632 |
41 |
N6A |
N |
N6A |
N |
N |
N |
0 |
-8.911 |
-0.775 |
-4.422 |
42 |
C6N |
C |
C6N |
N |
Y |
N |
0 |
6.775 |
1.32 |
0.845 |
43 |
N7A |
N |
N7A |
N |
Y |
N |
0 |
-6.797 |
-1.62 |
-2.357 |
44 |
C7N |
C |
C7N |
N |
N |
N |
0 |
8.444 |
4.842 |
-0.737 |
45 |
N7N |
N |
N7N |
N |
N |
N |
0 |
8.724 |
5.898 |
0.053 |
46 |
O7N |
O |
O7N |
N |
N |
N |
0 |
8.673 |
4.897 |
-1.929 |
47 |
C8A |
C |
C8A |
N |
Y |
N |
0 |
-5.886 |
-1.505 |
-1.435 |
48 |
O8N |
O |
O8N |
N |
N |
N |
0 |
6.765 |
2.245 |
3.042 |
49 |
HO1A |
H |
HO1A |
N |
N |
N |
0 |
-1.142 |
-4.42 |
0.474 |
50 |
N9A |
N |
N9A |
N |
Y |
N |
0 |
-5.682 |
-0.19 |
-1.143 |
51 |
H2B |
H |
H2B |
N |
N |
N |
0 |
-6.282 |
-0.156 |
1.296 |
52 |
H1B |
H |
H1B |
N |
N |
N |
0 |
-4.329 |
1.294 |
-0.502 |
53 |
H1D |
H |
H1D |
N |
N |
N |
0 |
6.634 |
0.627 |
-2.354 |
54 |
H2A |
H |
H2A |
N |
N |
N |
0 |
-7.845 |
3.308 |
-3.08 |
55 |
H2D |
H |
H2D |
N |
N |
N |
0 |
8.228 |
-0.871 |
-0.198 |
56 |
HO2D |
H |
HO2D |
N |
N |
N |
0 |
9.658 |
-1.135 |
-2.092 |
57 |
H2N |
H |
H2N |
N |
N |
N |
0 |
7.767 |
2.562 |
-2.019 |
58 |
HO2N |
H |
HO2N |
N |
N |
N |
0 |
2.245 |
-4.956 |
-0.833 |
59 |
HO2X |
H |
HO2X |
N |
N |
N |
0 |
-8.371 |
4.238 |
1.818 |
60 |
H3B |
H |
H3B |
N |
N |
N |
0 |
-4.648 |
-0.736 |
2.822 |
61 |
HO3B |
H |
HO3B |
N |
N |
N |
0 |
-3.349 |
1.044 |
3.747 |
62 |
H3D |
H |
H3D |
N |
N |
N |
0 |
7.417 |
-2.912 |
-1.034 |
63 |
HO3D |
H |
HO3D |
N |
N |
N |
0 |
8.293 |
-2.511 |
-3.242 |
64 |
HO3X |
H |
HO3X |
N |
N |
N |
0 |
-7.39 |
1.987 |
3.802 |
65 |
H4B |
H |
H4B |
N |
N |
N |
0 |
-2.454 |
0.63 |
1.252 |
66 |
H4D |
H |
H4D |
N |
N |
N |
0 |
5.095 |
-1.763 |
-2.38 |
67 |
H4N |
H |
H4N |
N |
N |
N |
0 |
7.807 |
4.373 |
1.873 |
68 |
H5B |
H |
H5B |
N |
N |
N |
0 |
-2.08 |
-1.177 |
2.997 |
69 |
H5BA |
H |
H5BA |
N |
N |
N |
0 |
-2.979 |
-2.301 |
1.949 |
70 |
H5D |
H |
H5D |
N |
N |
N |
0 |
5.174 |
-3.747 |
-0.818 |
71 |
H5DA |
H |
H5DA |
N |
N |
N |
0 |
5.479 |
-2.622 |
0.527 |
72 |
HN6A |
H |
HN6A |
N |
N |
N |
0 |
-9.562 |
-0.428 |
-5.052 |
73 |
HN6B |
H |
HN6B |
N |
N |
N |
0 |
-8.772 |
-1.732 |
-4.346 |
74 |
H6N |
H |
H6N |
N |
N |
N |
0 |
6.344 |
0.406 |
1.226 |
75 |
HN7N |
H |
HN7N |
N |
N |
N |
0 |
8.541 |
5.854 |
1.005 |
76 |
HN7A |
H |
HN7A |
N |
N |
N |
0 |
9.108 |
6.702 |
-0.331 |
77 |
H8A |
H |
H8A |
N |
N |
N |
0 |
-5.368 |
-2.331 |
-0.97 |
78 |
HO8N |
H |
HO8N |
N |
N |
N |
0 |
5.873 |
2.53 |
3.285 |
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