Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NJP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 78


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O3 O O3 N N N 0 1.159 -2.72 0.588
2 PA P PA N N N 0 -0.116 -2.823 1.566
3 PN P PN N N N 0 2.638 -3.355 0.608
4 N1A N N1A N Y N 0 -8.36 1.41 -3.724
5 O1A O O1A N N N 0 -0.826 -4.255 1.373
6 C1B C C1B R N N 0 -4.736 0.343 -0.159
7 C1D C C1D R N N 0 6.751 0.29 -1.323
8 N1N N N1N N Y N 1 7.045 1.423 -0.442
9 O1N O O1N N N N 0 3.161 -3.343 1.993
10 O1X O O1X N N N 0 -8.199 1.782 0.527
11 C2A C C2A N Y N 0 -7.668 2.248 -2.973
12 O2A O O2A N N N 0 0.327 -2.677 2.97
13 C2B C C2B R N N 0 -5.426 0.514 1.213
14 O2B O O2B N N N 0 -5.833 1.871 1.403
15 P2B P P2B N N N 0 -7.367 2.301 1.636
16 C2D C C2D R N N 0 7.864 -0.783 -1.222
17 O2D O O2D N N N 0 8.937 -0.492 -2.119
18 C2N C C2N N Y N 0 7.565 2.516 -0.96
19 O2N O O2N N N N 0 2.579 -4.872 0.07
20 O2X O O2X N N N 0 -7.473 3.907 1.68
21 N3A N N3A N Y N 0 -6.771 1.84 -2.101
22 C3B C C3B R N N 0 -4.333 0.126 2.234
23 O3B O O3B N N N 0 -4.03 1.232 3.087
24 C3D C C3D S N N 0 7.116 -2.068 -1.654
25 O3D O O3D N N N 0 7.362 -2.35 -3.033
26 C3N C C3N N Y N 0 7.859 3.616 -0.152
27 O3X O O3X N N N 0 -7.89 1.69 3.03
28 C4A C C4A N Y N 0 -6.524 0.544 -1.939
29 C4B C C4B R N N 0 -3.112 -0.233 1.358
30 O4B O O4B N N N 0 -3.671 -0.603 0.079
31 C4D C C4D R N N 0 5.628 -1.733 -1.43
32 O4D O O4D N N N 0 5.568 -0.407 -0.877
33 C4N C C4N N Y N 0 7.592 3.54 1.219
34 C5A C C5A N Y N 0 -7.235 -0.389 -2.714
35 C5B C C5B N N N 0 -2.349 -1.411 1.967
36 O5B O O5B N N N 0 -1.162 -1.653 1.208
37 C5D C C5D N N N 0 5.011 -2.734 -0.451
38 O5D O O5D N N N 0 3.608 -2.487 -0.339
39 C5N C C5N N Y N 0 7.042 2.366 1.717
40 C6A C C6A N Y N 0 -8.182 0.096 -3.632
41 N6A N N6A N N N 0 -8.911 -0.775 -4.422
42 C6N C C6N N Y N 0 6.775 1.32 0.845
43 N7A N N7A N Y N 0 -6.797 -1.62 -2.357
44 C7N C C7N N N N 0 8.444 4.842 -0.737
45 N7N N N7N N N N 0 8.724 5.898 0.053
46 O7N O O7N N N N 0 8.673 4.897 -1.929
47 C8A C C8A N Y N 0 -5.886 -1.505 -1.435
48 O8N O O8N N N N 0 6.765 2.245 3.042
49 HO1A H HO1A N N N 0 -1.142 -4.42 0.474
50 N9A N N9A N Y N 0 -5.682 -0.19 -1.143
51 H2B H H2B N N N 0 -6.282 -0.156 1.296
52 H1B H H1B N N N 0 -4.329 1.294 -0.502
53 H1D H H1D N N N 0 6.634 0.627 -2.354
54 H2A H H2A N N N 0 -7.845 3.308 -3.08
55 H2D H H2D N N N 0 8.228 -0.871 -0.198
56 HO2D H HO2D N N N 0 9.658 -1.135 -2.092
57 H2N H H2N N N N 0 7.767 2.562 -2.019
58 HO2N H HO2N N N N 0 2.245 -4.956 -0.833
59 HO2X H HO2X N N N 0 -8.371 4.238 1.818
60 H3B H H3B N N N 0 -4.648 -0.736 2.822
61 HO3B H HO3B N N N 0 -3.349 1.044 3.747
62 H3D H H3D N N N 0 7.417 -2.912 -1.034
63 HO3D H HO3D N N N 0 8.293 -2.511 -3.242
64 HO3X H HO3X N N N 0 -7.39 1.987 3.802
65 H4B H H4B N N N 0 -2.454 0.63 1.252
66 H4D H H4D N N N 0 5.095 -1.763 -2.38
67 H4N H H4N N N N 0 7.807 4.373 1.873
68 H5B H H5B N N N 0 -2.08 -1.177 2.997
69 H5BA H H5BA N N N 0 -2.979 -2.301 1.949
70 H5D H H5D N N N 0 5.174 -3.747 -0.818
71 H5DA H H5DA N N N 0 5.479 -2.622 0.527
72 HN6A H HN6A N N N 0 -9.562 -0.428 -5.052
73 HN6B H HN6B N N N 0 -8.772 -1.732 -4.346
74 H6N H H6N N N N 0 6.344 0.406 1.226
75 HN7N H HN7N N N N 0 8.541 5.854 1.005
76 HN7A H HN7A N N N 0 9.108 6.702 -0.331
77 H8A H H8A N N N 0 -5.368 -2.331 -0.97
78 HO8N H HO8N N N N 0 5.873 2.53 3.285