Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NSD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 26


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -3.709 -0.467 0.01
2 N1 N N1 N N N 0 -4.897 0.396 -0.02
3 C2 C C2 N N N 0 -2.448 0.399 -0.02
4 N2 N N2 N N N 0 0.0 0.331 -0.017
5 C3 C C3 N N N 0 -1.211 -0.501 0.011
6 N3 N N3 N N N 0 4.897 0.396 -0.02
7 C4 C C4 N N N 0 1.211 -0.501 0.011
8 C5 C C5 N N N 0 2.448 0.399 -0.02
9 C6 C C6 N N N 0 3.709 -0.467 0.01
10 H1 H H1 N N N 0 -3.717 -1.066 0.921
11 H1A H H1A N N N 0 -3.717 -1.127 -0.858
12 HN1 H HN1 N N N 0 -5.743 -0.153 -0.001
13 HN1A H HN1A N N N 0 -4.88 1.061 0.739
14 H2 H H2 N N N 0 -2.44 0.997 -0.931
15 H2A H H2A N N N 0 -2.44 1.058 0.848
16 H7 H H7 N N N 0 0.0 0.942 -0.82
17 H3 H H3 N N N 0 -1.219 -1.099 0.922
18 H3A H H3A N N N 0 -1.219 -1.16 -0.857
19 HN3 H HN3 N N N 0 4.88 1.061 0.739
20 HN3A H HN3A N N N 0 5.743 -0.153 -0.001
21 H5 H H5 N N N 0 2.44 0.997 -0.931
22 H5A H H5A N N N 0 2.44 1.058 0.848
23 H6 H H6 N N N 0 3.717 -1.127 -0.858
24 H6A H H6A N N N 0 3.717 -1.066 0.921
25 H4 H H4 N N N 0 1.219 -1.099 0.922
26 H17 H H17 N N N 0 1.219 -1.16 -0.857