Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : O5X

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 32


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C02 C C1 N Y N 0 -3.466 -1.053 0.142
2 C03 C C2 N Y N 0 -4.05 0.21 0.19
3 C04 C C3 N Y N 0 -3.252 1.332 0.046
4 C05 C C4 N Y N 0 -1.89 1.159 -0.141
5 C06 C C5 N Y N 0 -1.368 -0.133 -0.179
6 C07 C C6 N N N 0 -3.852 2.714 0.092
7 C08 C C7 N N N 0 0.038 -0.324 -0.372
8 C09 C C8 N N N 0 1.191 -0.481 -0.53
9 C10 C C9 N N N 0 2.636 -0.678 -0.728
10 C11 C C10 N N N 0 3.404 0.002 0.407
11 C13 C C11 N N N 0 5.312 0.504 -0.995
12 C14 C C12 N N N 0 5.603 0.235 1.393
13 N01 N N1 N Y N 0 -2.162 -1.188 -0.033
14 N02 N N2 N N N 0 -4.262 -2.183 0.285
15 N12 N N3 N N N 0 4.846 -0.194 0.21
16 H1 H H1 N N N 0 -5.115 0.314 0.337
17 H2 H H2 N N N 0 -1.241 2.014 -0.257
18 H5 H H5 N N N 0 -4.875 2.678 -0.282
19 H3 H H3 N N N 0 -3.854 3.075 1.121
20 H4 H H4 N N N 0 -3.262 3.388 -0.529
21 H9 H H9 N N N 0 3.105 -0.434 1.361
22 H6 H H6 N N N 0 2.861 -1.745 -0.73
23 H7 H H7 N N N 0 2.935 -0.242 -1.681
24 H8 H H8 N N N 0 3.179 1.069 0.41
25 H10 H H10 N N N 0 5.115 1.572 -0.895
26 H11 H H11 N N N 0 6.383 0.343 -1.118
27 H12 H H12 N N N 0 4.784 0.118 -1.867
28 H13 H H13 N N N 0 5.286 -0.348 2.258
29 H14 H H14 N N N 0 6.668 0.078 1.22
30 H15 H H15 N N N 0 5.417 1.292 1.58
31 H16 H H16 N N N 0 -3.86 -3.066 0.257
32 H17 H H17 N N N 0 -5.219 -2.09 0.414