Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : OBN

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 85


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 0.571 1.426 -1.301
2 C2 C C2 N N N 0 1.431 0.219 -1.683
3 C3 C C3 S N N 0 0.553 -0.838 -2.354
4 C4 C C4 N N N 0 -0.544 -1.28 -1.384
5 C5 C C5 S N N 0 -1.403 -0.073 -1.003
6 C6 C C6 N N N 0 -2.482 -0.58 -0.045
7 C7 C C7 N N N 0 -1.855 -1.136 1.234
8 C8 C C8 R N N 0 -0.988 -0.058 1.888
9 C9 C C9 S N N 0 0.109 0.398 0.928
10 C10 C C10 R N N 0 -0.527 0.986 -0.333
11 C11 C C11 R N N 0 0.958 1.473 1.614
12 C12 C C12 N N N 0 1.639 0.852 2.831
13 C13 C C13 R N N 0 0.601 0.373 3.848
14 C14 C C14 S N N 0 -0.43 -0.552 3.18
15 C15 C C15 N N N 0 0.384 -1.875 2.988
16 C16 C C16 N N N 0 1.228 -1.981 4.279
17 C17 C C17 R N N 0 1.347 -0.553 4.844
18 C18 C C18 N N N 0 -0.071 1.548 4.561
19 C19 C C19 N N N 0 -1.387 2.193 0.045
20 C20 C C20 N N N 0 0.701 -0.478 6.204
21 C21 C C21 N N N 0 -0.685 -0.953 6.568
22 C22 C C22 N N N 0 1.242 0.023 7.311
23 C23 C C23 N N N 0 0.289 -0.092 8.418
24 C1' C C1' R N N 0 -0.211 -1.366 -4.452
25 C2' C C2' R N N 0 -1.123 -0.917 -5.596
26 C3' C C3' R N N 0 -0.494 0.296 -6.29
27 C4' C C4' R N N 0 0.938 -0.063 -6.699
28 C5' C C5' S N N 0 1.694 -0.574 -5.471
29 C6' C C6' N N N 0 3.137 -0.902 -5.862
30 O1 O O1 N N N 0 -0.023 1.978 -2.477
31 O3 O O3 N N N 0 -0.043 -0.287 -3.529
32 O5 O O5 N N N 0 -2.02 0.44 -2.186
33 O11 O O11 N N N 0 1.945 1.959 0.703
34 O14 O O14 N N N 0 -1.506 -0.793 4.088
35 O19 O O19 N N N 0 -1.981 2.743 -1.132
36 O21 O O21 N N N 0 -0.847 -0.67 7.986
37 O23 O O23 N N N 0 0.494 0.279 9.557
38 O2' O O2' N N N 0 -1.271 -1.984 -6.536
39 O3' O O3' N N N 0 -1.257 0.634 -7.449
40 O4' O O4' N N N 0 1.593 1.097 -7.215
41 O5' O O5' N N N 0 1.06 -1.749 -4.97
42 H1 H H1 N N N 0 1.197 2.18 -0.822
43 H21 H 1H2 N N N 0 1.886 -0.2 -0.786
44 H22A H 2H2 N N N 0 2.213 0.534 -2.374
45 H3 H H3 N N N 0 1.165 -1.698 -2.626
46 H41 H 1H4 N N N 0 -1.168 -2.032 -1.867
47 H42 H 2H4 N N N 0 -0.094 -1.703 -0.486
48 H61 H 1H6 N N N 0 -3.099 -1.348 -0.511
49 H62 H 2H6 N N N 0 -3.101 0.283 0.199
50 H71 H 1H7 N N N 0 -1.237 -2.001 0.989
51 H72 H 2H7 N N N 0 -2.643 -1.437 1.924
52 H8 H H8 N N N 0 -1.609 0.814 2.088
53 H9 H H9 N N N 0 0.738 -0.45 0.659
54 H11 H H11 N N N 0 0.318 2.296 1.933
55 H121 H 1H12 N N N 0 2.243 0.003 2.509
56 H122 H 2H12 N N N 0 2.285 1.594 3.299
57 H151 H 1H15 N N N 0 1.029 -1.801 2.113
58 H152 H 2H15 N N N 0 -0.288 -2.728 2.899
59 H161 H 1H16 N N N 0 2.218 -2.374 4.047
60 H162 H 2H16 N N N 0 0.729 -2.628 5.0
61 H17 H H17 N N N 0 2.396 -0.263 4.912
62 H181 H 1H18 N N N 0 0.661 2.067 5.178
63 H182 H 2H18 N N N 0 -0.477 2.238 3.821
64 H183 H 3H18 N N N 0 -0.879 1.176 5.192
65 H191 H 1H19 N N N 0 -2.17 1.88 0.735
66 H192 H 2H19 N N N 0 -0.763 2.949 0.523
67 H211 H 1H21 N N N 0 -1.436 -0.416 5.99
68 H212 H 2H21 N N N 0 -0.768 -2.025 6.388
69 H22 H H22 N N N 0 2.232 0.45 7.383
70 H1' H H1' N N N 0 -0.664 -2.214 -3.938
71 H2' H H2' N N N 0 -2.1 -0.644 -5.198
72 H3' H H3' N N N 0 -0.478 1.142 -5.603
73 H4' H H4' N N N 0 0.915 -0.838 -7.465
74 H5' H H5' N N N 0 1.694 0.194 -4.699
75 H6'1 H 1H6' N N N 0 3.677 -1.265 -4.987
76 H6'2 H 2H6' N N N 0 3.138 -1.672 -6.634
77 HOE H HOE N N N 0 2.455 2.631 1.175
78 H6'3 H 3H6' N N N 0 3.623 -0.004 -6.243
79 HO1 H HO1 N N N 0 0.7 2.208 -3.075
80 HO5 H HO5 N N N 0 -2.516 -0.289 -2.582
81 HOF H HOF N N N 0 -2.069 -1.466 3.682
82 HON H HON N N N 0 -2.513 3.499 -0.85
83 HO2' H 'HO2 N N N 0 -1.663 -2.726 -6.056
84 HO3' H 'HO3 N N N 0 -2.151 0.839 -7.145
85 HO4' H 'HO4 N N N 0 2.489 0.827 -7.459