Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : OCV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -0.909 0.139 -7.343
2 C2 C C2 S N N 0 -0.418 -0.538 -6.09
3 C3 C C3 N N N 0 -0.609 0.397 -4.895
4 C4 C C4 N N N 0 -0.111 -0.291 -3.623
5 C7 C C7 N N N 0 -0.303 0.644 -2.428
6 C10 C C10 N N N 0 0.187 -0.033 -1.175
7 N11 N N11 N N N 0 0.117 0.606 0.009
8 C12 C C12 R N N 0 0.595 -0.053 1.227
9 C13 C C13 N N N 0 -0.194 0.444 2.41
10 N14 N N14 N N N 0 1.007 -0.862 -6.235
11 O15 O O15 N N N 0 0.645 -1.155 -1.232
12 C16 C C16 N N N 0 2.077 0.265 1.432
13 S17 S S17 N N N 0 3.027 -0.334 0.008
14 O18 O O18 N N N 0 -1.066 1.266 2.252
15 O19 O O19 N N N 0 -2.188 0.0 -7.725
16 O20 O O20 N N N 0 -0.151 0.809 -8.004
17 C30 C C30 R N N 0 -0.69 0.455 4.779
18 C31 C C31 N N N 0 -1.899 -0.42 4.98
19 C32 C C32 N N N 0 0.186 0.41 6.032
20 C33 C C33 N N N 0 0.635 -1.029 6.289
21 C37 C C37 N N N 0 1.414 1.299 5.828
22 O42 O O42 N N N 0 -2.1 -1.353 4.239
23 O43 O O43 N N N 0 -2.754 -0.164 5.983
24 O29 O O29 N N N 0 0.07 -0.024 3.639
25 HC2 H 2HC N N N 0 -0.984 -1.455 -5.928
26 HC31 H 1HC3 N N N 0 -1.667 0.637 -4.788
27 HC32 H 2HC3 N N N 0 -0.043 1.314 -5.057
28 HC41 H 1HC4 N N N 0 0.946 -0.531 -3.73
29 HC42 H 2HC4 N N N 0 -0.678 -1.208 -3.461
30 HC71 H 1HC7 N N N 0 -1.36 0.885 -2.32
31 HC72 H 2HC7 N N N 0 0.263 1.561 -2.59
32 HN11 H 1HN1 N N N 0 -0.248 1.503 0.054
33 HC21 H 1HC2 N N N 0 0.465 -1.131 1.131
34 H141 H 1H14 N N N 0 1.489 0.011 -6.382
35 H142 H 2H14 N N N 0 1.316 -1.217 -5.342
36 H161 H 1H16 N N N 0 2.207 1.343 1.528
37 H162 H 2H16 N N N 0 2.432 -0.225 2.338
38 HS17 H 17HS N N N 0 4.265 0.036 0.381
39 HO91 H 1HO9 N N N 0 -2.503 0.435 -8.529
40 HC03 H 3HC0 N N N 0 -1.01 1.481 4.596
41 HC23 H 3HC2 N N N 0 -0.385 0.77 6.888
42 H331 H 1H33 N N N 0 1.26 -1.061 7.182
43 H332 H 2H33 N N N 0 -0.239 -1.662 6.434
44 H333 H 3H33 N N N 0 1.206 -1.389 5.433
45 H371 H 1H37 N N N 0 1.985 0.939 4.972
46 H372 H 2H37 N N N 0 1.094 2.325 5.645
47 H373 H 3H37 N N N 0 2.038 1.267 6.721
48 HO34 H 4HO3 N N N 0 -3.531 -0.726 6.112