Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : OD2

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C C C1 N N N 0 6.211 -1.542 0.001
2 O O O1 N N N 0 5.74 -2.655 0.0
3 O1 O O2 N N N 0 7.543 -1.378 -0.004
4 C1 C C2 N N N 0 5.303 -0.34 0.002
5 S S S1 N N N 0 3.578 -0.886 0.0
6 C2 C C3 N Y N 0 2.762 0.675 0.001
7 N1 N N1 N Y N 0 3.463 1.804 0.002
8 C14 C C4 N Y N 0 2.857 2.977 0.003
9 N N N2 N Y N 0 1.553 3.097 0.003
10 C4 C C5 N Y N 0 0.75 2.006 0.002
11 C5 C C6 N Y N 0 -0.648 1.928 0.001
12 C6 C C7 N Y N 0 -1.157 0.691 0.0
13 S1 S S2 N Y N 0 0.128 -0.506 -0.001
14 C3 C C8 N Y N 0 1.359 0.748 -0.005
15 C7 C C9 N Y N 0 -2.601 0.375 0.0
16 C12 C C10 N Y N 0 -3.543 1.406 -0.005
17 C11 C C11 N Y N 0 -4.888 1.109 -0.005
18 C10 C C12 N Y N 0 -5.309 -0.217 -0.001
19 S2 S S3 N N N 0 -7.03 -0.594 -0.001
20 C13 C C13 N N N 0 -7.051 -2.408 0.006
21 C9 C C14 N Y N 0 -4.373 -1.247 0.004
22 C8 C C15 N Y N 0 -3.026 -0.955 -0.002
23 H1 H H1 N N N 0 8.085 -2.179 -0.008
24 H2 H H2 N N N 0 5.494 0.259 0.892
25 H3 H H3 N N N 0 5.495 0.261 -0.888
26 H4 H H4 N N N 0 3.46 3.873 0.005
27 H5 H H5 N N N 0 -1.274 2.809 0.002
28 H6 H H6 N N N 0 -3.217 2.436 -0.008
29 H7 H H7 N N N 0 -5.616 1.906 -0.009
30 H8 H H8 N N N 0 -6.54 -2.78 -0.882
31 H12 H H12 N N N 0 -2.3 -1.755 -0.002
32 H9 H H9 N N N 0 -6.542 -2.773 0.898
33 H10 H H10 N N N 0 -8.083 -2.759 0.006
34 H11 H H11 N N N 0 -4.702 -2.275 0.007