Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : OHR

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4' C C1 R N N 0 -2.894 -1.863 1.117
2 C1' C C2 R N N 0 -4.597 -0.328 0.988
3 C8 C C3 N Y N 0 -5.161 0.645 -1.271
4 C5 C C4 N Y N 0 -6.802 1.977 -0.782
5 C2 C C5 N Y N 0 -8.022 2.519 1.547
6 C3D C C6 S N N 0 7.431 1.827 -0.424
7 C4D C C7 R N N 0 6.079 1.317 0.111
8 C5D C C8 N N N 0 5.418 0.409 -0.928
9 C5' C C9 N N N 0 -1.849 -2.626 0.301
10 C2' C C10 N N N 0 -5.322 -1.677 1.19
11 C3' C C11 S N N 0 -4.176 -2.71 1.277
12 C6 C C12 N Y N 0 -7.867 2.891 -0.726
13 C4 C C13 N Y N 0 -6.396 1.356 0.412
14 C1D C C14 S N N 0 7.57 1.098 1.868
15 C2D C C15 R N N 0 8.461 1.338 0.623
16 N9 N N1 N Y N 0 -5.357 0.527 0.073
17 N7 N N2 N Y N 0 -6.01 1.496 -1.77
18 N6 N N3 N N N 0 -8.311 3.532 -1.869
19 N1 N N4 N Y N 0 -8.439 3.126 0.451
20 N3 N N5 N Y N 0 -7.029 1.655 1.542
21 O3D O O1 N N N 0 7.431 3.254 -0.501
22 O5D O O2 N N N 0 4.116 0.034 -0.475
23 O1B O O3 N N N 0 3.829 -2.188 -1.637
24 O2B O O4 N N N 0 2.714 -0.182 -2.688
25 O3A O O5 N N N 0 1.813 -1.235 -0.454
26 O1A O O6 N N N 0 0.347 -2.671 -1.923
27 O2A O O7 N N N 0 1.241 -3.718 0.193
28 O5' O O8 N N N 0 -0.633 -1.877 0.264
29 O4' O O9 N N N 0 -3.321 -0.678 0.41
30 O3' O O10 N N N 0 -4.188 -3.366 2.546
31 O4D O O11 N N N 0 6.347 0.572 1.311
32 O1D O O12 N N N 0 7.323 2.325 2.558
33 O2D O O13 N N N 0 9.441 2.346 0.884
34 PB P P1 N N N 0 3.133 -0.921 -1.32
35 PA P P2 N N N 0 0.685 -2.382 -0.511
36 H2 H H4 N N N 0 -8.515 2.739 2.482
37 H'4 H H1 N N N 0 -2.491 -1.597 2.094
38 H'1 H H2 N N N 0 -4.455 0.173 1.946
39 H5R2 H H3 N N N 0 -4.41 0.115 -1.836
40 HR'3 H H5 N N N 0 7.644 1.393 -1.4
41 HR'4 H H6 N N N 0 5.426 2.161 0.334
42 H5R1 H H7 N N N 0 5.333 0.942 -1.875
43 H1 H H8 N N N 0 6.025 -0.486 -1.067
44 H5'1 H H9 N N N 0 -1.664 -3.596 0.763
45 H5'2 H H10 N N N 0 -2.217 -2.772 -0.715
46 H'2 H H11 N N N 0 -5.898 -1.667 2.115
47 H3 H H12 N N N 0 -5.968 -1.894 0.339
48 H'3 H H13 N N N 0 -4.256 -3.438 0.469
49 HR'1 H H14 N N N 0 8.032 0.37 2.536
50 HR'2 H H15 N N N 0 8.935 0.412 0.299
51 H61 H H16 N N N 0 -7.885 3.352 -2.722
52 H62 H H17 N N N 0 -9.047 4.162 -1.818
53 HOR3 H H18 N N N 0 8.259 3.63 -0.832
54 HOB2 H H19 N N N 0 2.252 0.657 -2.557
55 HOA2 H H20 N N N 0 1.483 -3.602 1.122
56 HO'3 H H21 N N N 0 -4.971 -3.912 2.699
57 HOR1 H H22 N N N 0 6.715 2.24 3.306
58 HOR2 H H23 N N N 0 10.109 2.086 1.533