Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : OHU

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 4.279 -1.039 -0.07
2 N1 N N1 N N N 0 -2.281 0.295 -0.409
3 C2 C C2 N N N 0 -2.272 -0.157 0.858
4 O2 O O2 N N N 0 -1.314 0.075 1.57
5 N3 N N3 N N N 0 -3.308 -0.862 1.35
6 C4 C C4 N N N 0 -4.379 -1.128 0.576
7 O4 O O4 N N N 0 -5.316 -1.766 1.022
8 C5 C C5 N N N 0 -4.405 -0.659 -0.763
9 O5 O O5 N N N 0 -5.476 -0.915 -1.565
10 C6 C C6 N N N 0 -3.351 0.047 -1.232
11 C1' C C1' R N N 0 -1.141 1.065 -0.913
12 C2' C C2' N N N 0 -1.03 2.398 -0.149
13 C3' C C3' S N N 0 0.385 2.36 0.478
14 O3' O O3' N N N 0 1.02 3.636 0.382
15 C4' C C4' R N N 0 1.106 1.315 -0.412
16 O4' O O4' N N N 0 0.078 0.338 -0.685
17 C5' C C5' N N N 0 2.271 0.674 0.345
18 O5' O O5' N N N 0 2.988 -0.196 -0.533
19 OP1 O OP1 N N N 0 3.935 -1.856 1.115
20 OP2 O OP2 N N N 0 4.748 -2.005 -1.27
21 OP3 O OP3 N N Y 0 5.475 -0.028 0.304
22 HN3 H HN3 N N N 0 -3.283 -1.18 2.266
23 HO5 H HO5 N N N 0 -6.176 -1.426 -1.135
24 H6 H H6 N N N 0 -3.352 0.413 -2.248
25 H1' H H1' N N N 0 -1.266 1.258 -1.979
26 H2' H H2' N N N 0 -1.12 3.24 -0.835
27 H2'A H H2'A N N N 0 -1.79 2.456 0.63
28 H3' H H3' N N N 0 0.343 2.025 1.514
29 HO3' H HO3' N N N 0 0.555 4.343 0.85
30 H4' H H4' N N N 0 1.454 1.774 -1.338
31 H5' H H5' N N N 0 2.94 1.454 0.709
32 H5'A H H5'A N N N 0 1.885 0.102 1.188
33 HOP2 H HOP2 N N N 0 5.523 -2.544 -1.061
34 HOP3 H HOP3 N N Y 0 5.752 0.54 -0.428