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PDBeChem : Atoms of Molecule
Molecule : OHU
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 34
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
P |
P |
P |
N |
N |
N |
0 |
4.279 |
-1.039 |
-0.07 |
2 |
N1 |
N |
N1 |
N |
N |
N |
0 |
-2.281 |
0.295 |
-0.409 |
3 |
C2 |
C |
C2 |
N |
N |
N |
0 |
-2.272 |
-0.157 |
0.858 |
4 |
O2 |
O |
O2 |
N |
N |
N |
0 |
-1.314 |
0.075 |
1.57 |
5 |
N3 |
N |
N3 |
N |
N |
N |
0 |
-3.308 |
-0.862 |
1.35 |
6 |
C4 |
C |
C4 |
N |
N |
N |
0 |
-4.379 |
-1.128 |
0.576 |
7 |
O4 |
O |
O4 |
N |
N |
N |
0 |
-5.316 |
-1.766 |
1.022 |
8 |
C5 |
C |
C5 |
N |
N |
N |
0 |
-4.405 |
-0.659 |
-0.763 |
9 |
O5 |
O |
O5 |
N |
N |
N |
0 |
-5.476 |
-0.915 |
-1.565 |
10 |
C6 |
C |
C6 |
N |
N |
N |
0 |
-3.351 |
0.047 |
-1.232 |
11 |
C1' |
C |
C1' |
R |
N |
N |
0 |
-1.141 |
1.065 |
-0.913 |
12 |
C2' |
C |
C2' |
N |
N |
N |
0 |
-1.03 |
2.398 |
-0.149 |
13 |
C3' |
C |
C3' |
S |
N |
N |
0 |
0.385 |
2.36 |
0.478 |
14 |
O3' |
O |
O3' |
N |
N |
N |
0 |
1.02 |
3.636 |
0.382 |
15 |
C4' |
C |
C4' |
R |
N |
N |
0 |
1.106 |
1.315 |
-0.412 |
16 |
O4' |
O |
O4' |
N |
N |
N |
0 |
0.078 |
0.338 |
-0.685 |
17 |
C5' |
C |
C5' |
N |
N |
N |
0 |
2.271 |
0.674 |
0.345 |
18 |
O5' |
O |
O5' |
N |
N |
N |
0 |
2.988 |
-0.196 |
-0.533 |
19 |
OP1 |
O |
OP1 |
N |
N |
N |
0 |
3.935 |
-1.856 |
1.115 |
20 |
OP2 |
O |
OP2 |
N |
N |
N |
0 |
4.748 |
-2.005 |
-1.27 |
21 |
OP3 |
O |
OP3 |
N |
N |
Y |
0 |
5.475 |
-0.028 |
0.304 |
22 |
HN3 |
H |
HN3 |
N |
N |
N |
0 |
-3.283 |
-1.18 |
2.266 |
23 |
HO5 |
H |
HO5 |
N |
N |
N |
0 |
-6.176 |
-1.426 |
-1.135 |
24 |
H6 |
H |
H6 |
N |
N |
N |
0 |
-3.352 |
0.413 |
-2.248 |
25 |
H1' |
H |
H1' |
N |
N |
N |
0 |
-1.266 |
1.258 |
-1.979 |
26 |
H2' |
H |
H2' |
N |
N |
N |
0 |
-1.12 |
3.24 |
-0.835 |
27 |
H2'A |
H |
H2'A |
N |
N |
N |
0 |
-1.79 |
2.456 |
0.63 |
28 |
H3' |
H |
H3' |
N |
N |
N |
0 |
0.343 |
2.025 |
1.514 |
29 |
HO3' |
H |
HO3' |
N |
N |
N |
0 |
0.555 |
4.343 |
0.85 |
30 |
H4' |
H |
H4' |
N |
N |
N |
0 |
1.454 |
1.774 |
-1.338 |
31 |
H5' |
H |
H5' |
N |
N |
N |
0 |
2.94 |
1.454 |
0.709 |
32 |
H5'A |
H |
H5'A |
N |
N |
N |
0 |
1.885 |
0.102 |
1.188 |
33 |
HOP2 |
H |
HOP2 |
N |
N |
N |
0 |
5.523 |
-2.544 |
-1.061 |
34 |
HOP3 |
H |
HOP3 |
N |
N |
Y |
0 |
5.752 |
0.54 |
-0.428 |
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