Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : OL1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O14 O O14 N N N 0 -1.299 2.744 -0.334
2 C13 C C13 N N N 0 -1.461 1.425 0.193
3 C15 C C15 N Y N 0 -2.727 0.817 -0.355
4 O19 O O19 N Y N 0 -3.768 0.399 0.376
5 C18 C C18 N Y N 0 -4.702 -0.08 -0.476
6 C20 C C20 N Y N 0 -6.017 -0.647 -0.113
7 C25 C C25 N Y N 0 -6.831 -1.198 -1.104
8 C24 C C24 N Y N 0 -8.059 -1.724 -0.748
9 C23 C C23 N Y N 0 -8.436 -1.684 0.588
10 C22 C C22 N Y N 0 -7.581 -1.123 1.518
11 N21 N N21 N Y N 0 -6.413 -0.633 1.155
12 C17 C C17 N Y N 0 -4.199 0.059 -1.73
13 N16 N N16 N Y N 0 -2.985 0.618 -1.618
14 C12 C C12 N N N 0 -0.264 0.563 -0.212
15 C11 C C11 N N N 0 1.02 1.181 0.345
16 C10 C C10 N N N 0 2.218 0.319 -0.06
17 C9 C C9 N N N 0 3.502 0.937 0.496
18 C8 C C8 N N N 0 4.7 0.075 0.091
19 C7 C C7 N N N 0 5.984 0.692 0.648
20 C3 C C3 N Y N 0 7.164 -0.157 0.249
21 C2 C C2 N Y N 0 7.829 0.098 -0.936
22 C4 C C4 N Y N 0 7.583 -1.186 1.07
23 C5 C C5 N Y N 0 8.665 -1.965 0.704
24 C6 C C6 N Y N 0 9.327 -1.714 -0.483
25 C1 C C1 N Y N 0 8.911 -0.681 -1.302
26 OXT O OXT N N Y 0 -1.542 1.488 1.619
27 HXT H HXT N N N 0 -1.653 0.628 2.045
28 H14 H H14 N N N 0 -1.237 2.777 -1.298
29 H121 H H121 N N N 0 -0.387 -0.442 0.19
30 H122 H H122 N N N 0 -0.202 0.515 -1.299
31 H17 H H17 N N N 0 -4.688 -0.225 -2.65
32 H25 H H25 N N N 0 -6.507 -1.213 -2.134
33 H24 H H24 N N N 0 -8.711 -2.157 -1.492
34 H23 H H23 N N N 0 -9.389 -2.086 0.897
35 H22 H H22 N N N 0 -7.872 -1.091 2.557
36 H111 H H111 N N N 0 1.144 2.187 -0.057
37 H112 H H112 N N N 0 0.959 1.229 1.432
38 H101 H H101 N N N 0 2.094 -0.687 0.342
39 H102 H H102 N N N 0 2.28 0.271 -1.147
40 H91C H H91C N N N 0 3.626 1.942 0.095
41 H92C H H92C N N N 0 3.441 0.985 1.584
42 H81C H H81C N N N 0 4.576 -0.931 0.493
43 H82C H H82C N N N 0 4.761 0.026 -0.996
44 H71C H H71C N N N 0 6.108 1.698 0.246
45 H72C H H72C N N N 0 5.923 0.74 1.735
46 H2 H H2 N N N 0 7.504 0.905 -1.575
47 H4 H H4 N N N 0 7.067 -1.382 1.998
48 H1 H H1 N N N 0 9.431 -0.482 -2.227
49 H5 H H5 N N N 0 8.994 -2.769 1.346
50 H6 H H6 N N N 0 10.173 -2.323 -0.769