Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : OMJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O27 O O1 N N N 0 3.231 2.302 0.579
2 C25 C C1 S N N 0 5.017 0.778 0.38
3 C12 C C2 N Y N 0 -1.49 -0.984 -0.343
4 C13 C C3 N Y N 0 -0.183 -0.983 -0.791
5 C14 C C4 N Y N 0 0.79 -1.671 -0.09
6 C18 C C5 N N N 0 2.954 -0.504 0.03
7 C21 C C6 N N N 0 4.947 -1.147 -1.25
8 C22 C C7 N N N 0 5.653 -0.236 -2.261
9 C01 C C8 N N N 0 -5.824 2.373 1.116
10 C02 C C9 N Y N 0 -5.357 1.079 0.502
11 C03 C C10 N Y N 0 -4.442 0.292 1.165
12 C04 C C11 N Y N 0 -4.011 -0.903 0.6
13 C05 C C12 N Y N 0 -4.501 -1.307 -0.637
14 C06 C C13 N Y N 0 -5.416 -0.526 -1.306
15 C07 C C14 N Y N 0 -5.856 0.673 -0.739
16 C08 C C15 N N N 0 -6.812 1.486 -1.429
17 C11 C C16 N Y N 0 -1.826 -1.677 0.811
18 C15 C C17 N Y N 0 0.458 -2.362 1.06
19 C16 C C18 N Y N 0 -0.848 -2.372 1.51
20 C17 C C19 N N N 0 2.215 -1.667 -0.581
21 C24 C C20 N N N 0 5.72 1.595 -0.71
22 C26 C C21 N N N 0 4.082 1.668 1.157
23 N09 N N1 N N N 0 -7.57 2.13 -1.976
24 N20 N N2 N N N 0 4.252 -0.3 -0.268
25 O10 O O2 N N N 0 -3.109 -1.676 1.257
26 O19 O O3 N N N 0 2.379 0.248 0.789
27 O23 O O4 N N N 0 6.459 0.712 -1.557
28 O28 O O5 N N N 0 4.194 1.756 2.492
29 H1 H H1 N N N 0 5.759 0.348 1.053
30 H2 H H2 N N N 0 -2.249 -0.443 -0.889
31 H3 H H3 N N N 0 0.079 -0.444 -1.69
32 H4 H H4 N N N 0 4.224 -1.779 -1.766
33 H5 H H5 N N N 0 5.682 -1.771 -0.741
34 H6 H H6 N N N 0 6.285 -0.837 -2.914
35 H7 H H7 N N N 0 4.909 0.291 -2.858
36 H8 H H8 N N N 0 -6.702 2.186 1.735
37 H9 H H9 N N N 0 -5.028 2.792 1.732
38 H10 H H10 N N N 0 -6.081 3.079 0.326
39 H11 H H11 N N N 0 -4.058 0.603 2.125
40 H12 H H12 N N N 0 -4.163 -2.236 -1.073
41 H13 H H13 N N N 0 -5.796 -0.841 -2.267
42 H14 H H14 N N N 0 1.22 -2.899 1.606
43 H15 H H15 N N N 0 -1.107 -2.912 2.408
44 H16 H H16 N N N 0 2.701 -2.599 -0.291
45 H17 H H17 N N N 0 2.225 -1.574 -1.667
46 H18 H H18 N N N 0 4.976 2.129 -1.302
47 H19 H H19 N N N 0 6.399 2.311 -0.248
48 H20 H H20 N N N 0 3.571 2.339 2.947