Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : OOM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 55


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 4.264 4.113 1.386
2 C2 C C2 N N N 0 4.491 3.523 -0.007
3 C3 C C3 N N N 0 3.628 4.27 -1.025
4 C4 C C4 N N N 0 5.967 3.666 -0.386
5 C5 C C5 N Y N 0 4.113 2.064 -0.003
6 C6 C C6 N Y N 0 2.81 1.558 -0.002
7 C7 C C7 N Y N 0 2.889 0.199 0.002
8 C11 C C8 N N N 0 -0.609 -1.182 0.003
9 C18 C C9 N Y N 0 -5.432 -0.301 0.004
10 C19 C C10 N Y N 0 -6.634 -0.255 -0.689
11 C21 C C11 N Y N 0 -6.939 2.021 0.001
12 C23 C C12 N Y N 0 -5.74 1.973 0.698
13 C24 C C13 N Y N 0 -4.989 0.815 0.699
14 C27 C C14 N Y N 0 4.735 -1.432 0.008
15 C30 C C15 N Y N 0 5.765 -4.0 0.006
16 C31 C C16 N Y N 0 6.424 -2.991 -0.674
17 C32 C C17 N Y N 0 5.909 -1.71 -0.679
18 N8 N N1 N N N 0 1.815 -0.69 0.004
19 C9 C C18 N N N 0 0.552 -0.221 0.001
20 O10 O O1 N N N 0 0.349 0.975 -0.002
21 S12 S S1 N N N 0 -2.162 -0.252 -0.001
22 C13 C C19 N Y N 0 -3.316 -1.584 0.001
23 N14 N N2 N Y N 0 -3.029 -2.868 0.005
24 N15 N N3 N Y N 0 -4.104 -3.569 0.007
25 N16 N N4 N Y N 0 -5.141 -2.803 0.004
26 N17 N N5 N Y N 0 -4.668 -1.479 0.005
27 C20 C C20 N Y N 0 -7.385 0.904 -0.69
28 O22 O O2 N N N 0 -7.68 3.161 0.0
29 N25 N N6 N Y N 0 4.209 -0.133 0.004
30 N26 N N7 N Y N 0 4.949 1.057 -0.005
31 C28 C C21 N Y N 0 4.079 -2.445 0.694
32 C29 C C22 N Y N 0 4.596 -3.726 0.692
33 H1 H H1 N N N 0 4.537 5.168 1.383
34 H2 H H2 N N N 0 3.213 4.01 1.656
35 H3 H H3 N N N 0 4.879 3.58 2.111
36 H4 H H4 N N N 0 3.902 5.325 -1.028
37 H5 H H5 N N N 0 3.79 3.85 -2.017
38 H6 H H6 N N N 0 2.577 4.168 -0.755
39 H7 H H7 N N N 0 6.582 3.133 0.339
40 H8 H H8 N N N 0 6.129 3.245 -1.379
41 H9 H H9 N N N 0 6.24 4.721 -0.389
42 H10 H H10 N N N 0 1.901 2.142 -0.004
43 H11 H H11 N N N 0 -0.56 -1.812 -0.886
44 H12 H H12 N N N 0 -0.562 -1.807 0.894
45 H13 H H13 N N N 0 -6.982 -1.124 -1.227
46 H14 H H14 N N N 0 -5.393 2.843 1.235
47 H15 H H15 N N N 0 -4.056 0.778 1.242
48 H16 H H16 N N N 0 6.17 -5.001 0.009
49 H17 H H17 N N N 0 7.342 -3.206 -1.201
50 H18 H H18 N N N 0 6.418 -0.925 -1.218
51 H19 H H19 N N N 0 1.977 -1.646 0.006
52 H20 H H20 N N N 0 -8.319 0.942 -1.233
53 H21 H H21 N N N 0 -7.464 3.77 -0.72
54 H22 H H22 N N N 0 3.166 -2.232 1.23
55 H23 H H23 N N N 0 4.086 -4.515 1.225