Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : P5G

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 -2.845 -0.749 0.242
2 C5 C C2 N N N 0 -1.415 -0.524 0.662
3 C6 C C3 R N N 0 -0.726 0.395 -0.349
4 C7 C C4 N N N 0 -1.315 1.821 -0.273
5 C8 C C5 N N N 0 0.901 2.098 0.272
6 C10 C C6 N N N 0 1.659 0.15 -1.148
7 C13 C C7 N Y N 0 5.146 1.462 -0.535
8 C15 C C8 N Y N 0 5.04 -0.812 0.237
9 C17 C C9 N Y N 0 3.711 -0.878 -0.152
10 C20 C C10 N Y N 0 -5.47 -1.169 -0.532
11 C1 C C11 N N N 0 -5.735 1.787 1.624
12 C11 C C12 N Y N 0 3.103 0.224 -0.725
13 C12 C C13 N Y N 0 3.821 1.389 -0.921
14 C14 C C14 N Y N 0 5.76 0.363 0.045
15 C16 C C15 N N N 0 4.84 -3.068 0.962
16 C18 C C16 N Y N 0 -3.161 -1.808 -0.589
17 C19 C C17 N Y N 0 -4.471 -2.02 -0.976
18 C2 C C18 N Y N 0 -5.154 -0.11 0.313
19 C3 C C19 N Y N 0 -3.838 0.1 0.693
20 C9 C C20 R N N 0 0.764 0.581 0.016
21 O1 O O1 N N N 0 -6.133 0.721 0.76
22 O2 O O2 N N N 0 -0.185 2.698 -0.474
23 O3 O O3 N N N 0 7.064 0.433 0.424
24 O4 O O4 N N N 0 5.639 -1.894 0.801
25 O5 O O5 N N N 0 -6.76 -1.376 -0.913
26 H52 H H1 N N N 0 -1.395 -0.06 1.648
27 H51 H H2 N N N 0 -0.892 -1.48 0.699
28 H6 H H3 N N N 0 -0.825 -0.005 -1.358
29 H72 H H4 N N N 0 -2.054 1.969 -1.06
30 H71 H H5 N N N 0 -1.761 1.996 0.706
31 H81 H H6 N N N 0 0.797 2.315 1.335
32 H82 H H7 N N N 0 1.862 2.459 -0.095
33 H9L H H8 N N N 0 1.495 0.813 -1.997
34 H10 H H9 N N N 0 1.416 -0.873 -1.433
35 H9N H H10 N N N 0 5.705 2.373 -0.69
36 H17 H H11 N N N 0 3.15 -1.788 -0.003
37 H12 H H12 N N N 0 -5.021 2.428 1.105
38 H13 H H13 N N N 0 -6.61 2.373 1.906
39 H11 H H14 N N N 0 -5.27 1.375 2.519
40 H9M H H15 N N N 0 3.345 2.245 -1.377
41 H16 H H16 N N N 0 3.986 -2.841 1.6
42 H9O H H17 N N N 0 4.486 -3.403 -0.013
43 H9P H H18 N N N 0 5.438 -3.854 1.422
44 H18 H H19 N N N 0 -2.382 -2.472 -0.935
45 H19 H H20 N N N 0 -4.715 -2.848 -1.625
46 H31 H H21 N N N 0 -3.589 0.926 1.342
47 H9 H H22 N N N 0 1.01 0.016 0.915
48 H32 H H23 N N N 0 7.689 0.17 -0.265
49 H53 H H24 N N N 0 -7.258 -1.952 -0.318