Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : P5I

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 -1.246 0.363 0.002
2 C13 C C2 N Y N 0 1.762 0.315 0.008
3 C15 C C3 N Y N 0 4.348 0.562 0.004
4 C17 C C4 N Y N 0 5.497 2.67 0.019
5 C04 C C8 N N N 0 -6.829 0.462 -0.01
6 C21 C C5 N Y N 0 5.573 -0.102 -0.003
7 C24 C C6 N Y N 0 -1.191 -2.049 -0.003
8 C02 C C7 N N N 0 -4.72 -0.757 -0.013
9 C05 C C9 N N N 0 -7.296 1.895 -0.002
10 C08 C C10 N Y N 0 -3.243 -0.794 -0.009
11 C11 C C11 N Y N 0 -0.51 -0.829 0.001
12 C12 C C12 N Y N 0 0.967 -0.797 0.004
13 C14 C C13 N Y N 0 3.081 -0.211 0.002
14 C16 C C14 N Y N 0 4.317 1.955 0.017
15 C18 C C15 N Y N 0 6.71 2.007 0.007
16 C19 C C16 N Y N 0 6.748 0.623 -0.001
17 C25 C C17 N Y N 0 -2.581 -2.028 -0.006
18 N03 N N1 N N N 0 -5.364 0.426 -0.007
19 N22 N N3 N Y N 0 2.957 -1.516 -0.004
20 N09 N N2 N Y N 0 -2.557 0.345 -0.001
21 O01 O O1 N N N 0 -5.353 -1.795 -0.021
22 O06 O O2 N N N 0 -8.609 2.173 -0.003
23 O07 O O3 N N N 0 -6.488 2.794 0.006
24 O23 O O4 N Y N 0 1.797 -1.856 0.002
25 O26 O O5 N N N 0 -3.286 -3.187 -0.01
26 CL20 CL CL1 N N N 0 8.275 -0.203 -0.016
27 H1 H H1 N N N 0 -0.726 1.31 0.01
28 H4 H H4 N N N 0 5.602 -1.182 -0.008
29 H2 H H2 N N N 0 1.458 1.351 0.01
30 H3 H H3 N N N 0 5.473 3.75 0.029
31 H5 H H5 N N N 0 -0.651 -2.984 -0.004
32 H6 H H6 N N N 0 -7.207 -0.048 0.876
33 H7 H H7 N N N 0 -7.203 -0.037 -0.904
34 H8 H H8 N N N 0 3.37 2.474 0.026
35 H9 H H9 N N N 0 7.632 2.57 0.007
36 H10 H H10 N N N 0 -4.859 1.254 0.0
37 H11 H H11 N N N 0 -8.86 3.107 0.003
38 H12 H H12 N N N 0 -3.493 -3.525 0.873