Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PA1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 25


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 1.564 0.223 0.505
2 O1 O O1 N N Y 0 1.77 -1.188 0.422
3 C2 C C2 R N N 0 0.529 0.524 1.591
4 N2 N N2 N N N 0 1.026 0.047 2.889
5 C3 C C3 R N N 0 -0.78 -0.193 1.249
6 O3 O O3 N N N 0 -1.802 0.195 2.169
7 C4 C C4 S N N 0 -1.194 0.194 -0.174
8 O4 O O4 N N N 0 -2.33 -0.576 -0.571
9 C5 C C5 R N N 0 -0.029 -0.081 -1.127
10 O5 O O5 N N N 0 1.098 0.707 -0.753
11 C6 C C6 N N N 0 -0.447 0.274 -2.556
12 O6 O O6 N N N 0 0.636 0.011 -3.449
13 H1 H H1 N N N 0 2.505 0.713 0.755
14 HO1 H HO1 N N Y 0 2.427 -1.334 -0.271
15 H2 H H2 N N N 0 0.354 1.599 1.64
16 HN21 H HN21 N N N 0 1.886 0.543 3.07
17 HN22 H HN22 N N Y 0 0.363 0.355 3.584
18 H3 H H3 N N N 0 -0.629 -1.271 1.304
19 HO3 H HO3 N N Y 0 -1.501 -0.067 3.049
20 H4 H H4 N N N 0 -1.446 1.255 -0.203
21 HO4 H HO4 N N Y 0 -2.552 -0.304 -1.472
22 H5 H H5 N N N 0 0.235 -1.137 -1.08
23 H61 H H61 N N N 0 -1.309 -0.327 -2.843
24 H62 H H62 N N N 0 -0.709 1.331 -2.605
25 HO6 H HO6 N N Y 0 0.332 0.248 -4.335