Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : PB8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 94


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 2.948 -6.969 0.488
2 C2 C C2 N Y N 0 -9.258 -1.169 1.333
3 C3 C C3 N Y N 0 -9.128 -0.047 2.131
4 C4 C C4 N Y N 0 2.272 -6.762 -0.7
5 C5 C C5 N Y N 0 3.561 -5.908 1.128
6 C6 C C6 N Y N 0 -8.163 -1.651 0.644
7 C7 C C7 N Y N 0 -7.906 0.586 2.234
8 C8 C C8 N Y N 0 2.209 -5.495 -1.247
9 C9 C C9 N Y N 0 3.498 -4.641 0.58
10 C10 C C10 N Y N 0 -0.522 1.915 -2.631
11 C11 C C11 N Y N 0 -1.754 3.092 -0.948
12 C12 C C12 N Y N 0 0.293 4.009 -1.795
13 C13 C C13 N Y N 0 -6.935 -1.017 0.748
14 C14 C C14 N Y N 0 -6.806 0.104 1.541
15 C15 C C15 N Y N 0 2.821 -4.434 -0.607
16 C16 C C16 N Y N 0 -1.614 2.003 -1.787
17 C17 C C17 N Y N 0 0.432 2.918 -2.635
18 C18 C C18 N Y N 0 -0.801 4.096 -0.951
19 C19 C C19 N N N 0 2.846 0.142 0.477
20 C20 C C20 N N N 0 3.167 2.741 1.973
21 C28 C C28 N N N 0 2.93 4.2 2.268
22 C21 C C21 N N N 0 0.166 -0.255 -0.852
23 C22 C C22 N N N 0 -5.765 -1.585 -0.015
24 C23 C C23 N N N 0 -5.496 0.835 1.677
25 C24 C C24 N N N 0 4.798 0.799 -0.782
26 C25 C C25 N N N 0 3.601 0.458 -1.697
27 C26 C C26 R N N 0 -4.649 -0.544 -0.11
28 C27 C C27 R N N 0 4.108 0.969 0.591
29 C29 C C29 N N N 0 6.989 0.931 3.138
30 C30 C C30 N N N 0 7.097 1.305 0.67
31 C31 C C31 N N N 0 2.753 -3.052 -1.205
32 C32 C C32 N N N 0 -2.652 0.911 -1.783
33 C33 C C33 N N N 0 5.001 0.43 1.71
34 C37 C C37 N N N 0 6.195 1.366 1.904
35 C34 C C34 N N N 0 1.516 -2.327 -0.672
36 C35 C C35 S N N 0 1.447 -0.924 -1.279
37 C36 C C36 R N N 0 -3.381 -1.2 -0.662
38 C38 C C38 S N N 0 -2.267 -0.155 -0.756
39 N39 N N39 N N N 0 -4.385 -0.017 1.238
40 N40 N N40 N N N 0 2.589 -0.134 -0.814
41 N41 N N41 N N N 0 3.778 2.376 0.828
42 N42 N N42 N N N 0 -1.022 -0.806 -1.171
43 O43 O O43 N N N 0 2.167 -0.224 1.413
44 O44 O O44 N N N 0 2.807 1.896 2.765
45 O45 O O45 N N N 0 0.204 0.781 -0.221
46 O46 O O46 N N N 0 -3.647 -1.73 -1.962
47 F47 F F47 N N N 0 1.499 2.832 -3.46
48 F48 F F48 N N N 0 -0.938 5.161 -0.131
49 H1 H H1 N N N 0 2.994 -7.959 0.918
50 H2 H H2 N N N 0 -10.212 -1.668 1.253
51 H3 H H3 N N N 0 -9.982 0.333 2.673
52 H4 H H4 N N N 0 1.793 -7.591 -1.2
53 H5 H H5 N N N 0 4.089 -6.07 2.056
54 H6 H H6 N N N 0 -8.264 -2.527 0.021
55 H7 H H7 N N N 0 -7.806 1.462 2.857
56 H8 H H8 N N N 0 1.681 -5.334 -2.176
57 H9 H H9 N N N 0 3.977 -3.812 1.081
58 H10 H H10 N N N 0 -0.412 1.061 -3.283
59 H11 H H11 N N N 0 -2.607 3.16 -0.289
60 H12 H H12 N N N 0 1.037 4.792 -1.798
61 H22 H H22 N N N 0 -5.392 -2.47 0.501
62 H24 H H24 N N N 0 5.516 -0.021 -0.758
63 H22A H H22A N N N 0 -6.088 -1.862 -1.018
64 H23 H H23 N N N 0 -5.521 1.737 1.066
65 H23A H H23A N N N 0 -5.346 1.114 2.72
66 H24A H H24A N N N 0 5.277 1.726 -1.095
67 H25 H H25 N N N 0 3.212 1.364 -2.162
68 H25A H H25A N N N 0 3.902 -0.259 -2.46
69 H26 H H26 N N N 0 -4.959 0.266 -0.769
70 H28 H H28 N N N 0 3.317 4.805 1.448
71 H28A H H28A N N N 0 1.86 4.38 2.377
72 H28B H H28B N N N 0 3.44 4.472 3.192
73 H29 H H29 N N N 0 7.888 1.542 3.226
74 H29A H H29A N N N 0 6.375 1.057 4.029
75 H29B H H29B N N N 0 7.272 -0.117 3.037
76 H30 H H30 N N N 0 7.303 0.264 0.421
77 H30A H H30A N N N 0 6.596 1.787 -0.17
78 H30B H H30B N N N 0 8.034 1.821 0.878
79 H31 H H31 N N N 0 3.648 -2.493 -0.931
80 H31A H H31A N N N 0 2.691 -3.128 -2.29
81 H32 H H32 N N N 0 -3.623 1.333 -1.522
82 H32A H H32A N N N 0 -2.707 0.458 -2.773
83 H33 H H33 N N N 0 4.429 0.374 2.636
84 H33A H H33A N N N 0 5.358 -0.564 1.443
85 H34 H H34 N N N 0 0.621 -2.886 -0.946
86 H34A H H34A N N N 0 1.578 -2.25 0.413
87 H35 H H35 N N N 0 1.474 -0.997 -2.366
88 H36 H H36 N N N 0 -3.07 -2.005 0.002
89 H37 H H37 N N N 0 5.839 2.386 2.044
90 H38 H H38 N N N 0 -2.125 0.313 0.218
91 HN39 H HN39 N N N 0 -3.511 0.486 1.265
92 HN41 H HN41 N N N 0 4.0 3.045 0.162
93 HN42 H HN42 N N N 0 -1.052 -1.634 -1.676
94 HO46 H HO46 N N N 0 -3.931 -1.068 -2.607