Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PFD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 F29 F F29 N N N 0 2.709 0.298 -7.067
2 C28 C C28 N Y N 0 1.706 0.108 -6.183
3 C26 C C26 N Y N 0 1.949 0.227 -4.825
4 C24 C C24 N Y N 0 0.924 0.034 -3.919
5 C27 C C27 N Y N 0 0.435 -0.206 -6.635
6 C25 C C25 N Y N 0 -0.59 -0.405 -5.731
7 C23 C C23 N Y N 0 -0.349 -0.28 -4.371
8 O22 O O22 N N N 0 -1.358 -0.471 -3.481
9 C20 C C20 N Y N 0 -0.854 -0.192 -2.249
10 C16 C C16 N Y N 0 -0.227 -1.187 -1.515
11 C12 C C12 N Y N 0 0.284 -0.904 -0.263
12 C17 C C17 N Y N 0 -0.968 1.088 -1.727
13 C13 C C13 N Y N 0 -0.461 1.369 -0.473
14 C6 C C6 N Y N 0 0.17 0.375 0.258
15 O2 O O2 N N N 0 0.674 0.655 1.49
16 C1 C C1 N N N 0 -0.372 0.405 2.43
17 C5 C C5 N N N 0 0.162 0.725 3.828
18 C11 C C11 N N N 0 1.408 -0.119 4.102
19 O15 O O15 N N N 0 1.98 0.267 5.353
20 C19 C C19 N N N 0 3.133 -0.551 5.552
21 C21 C C21 N N N 0 3.796 -0.186 6.882
22 C4 C C4 N N N 0 -1.512 1.36 2.132
23 O10 O O10 N N N 0 -1.341 2.561 2.148
24 N9 N N9 N N N 0 -2.716 0.83 1.846
25 C14 C C14 N N N 0 -2.918 -0.491 1.825
26 O18 O O18 N N N 0 -4.037 -0.886 1.56
27 N7 N N7 N N N 0 -1.98 -1.411 2.076
28 C3 C C3 N N N 0 -0.709 -1.072 2.38
29 O8 O O8 N N N 0 0.13 -1.917 2.606
30 H26 H H26 N N N 0 2.94 0.472 -4.473
31 H24 H H24 N N N 0 1.114 0.128 -2.86
32 H27 H H27 N N N 0 0.247 -0.298 -7.694
33 H25 H H25 N N N 0 -1.58 -0.65 -6.084
34 H16 H H16 N N N 0 -0.138 -2.184 -1.921
35 H12 H H12 N N N 0 0.772 -1.679 0.308
36 H17 H H17 N N N 0 -1.457 1.863 -2.298
37 H13 H H13 N N N 0 -0.55 2.366 -0.066
38 H51 H 1H5 N N N 0 -0.602 0.496 4.57
39 H52 H 2H5 N N N 0 0.42 1.782 3.886
40 H111 H 1H11 N N N 0 2.136 0.038 3.306
41 H112 H 2H11 N N N 0 1.132 -1.173 4.139
42 H191 H 1H19 N N N 0 3.839 -0.389 4.737
43 H192 H 2H19 N N N 0 2.835 -1.6 5.57
44 H211 H 1H21 N N N 0 4.676 -0.811 7.033
45 H212 H 2H21 N N N 0 4.094 0.861 6.863
46 H213 H 3H21 N N N 0 3.09 -0.349 7.696
47 HN9 H HN9 N N N 0 -3.458 1.423 1.651
48 HN7 H HN7 N N N 0 -2.22 -2.351 2.038