Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PLT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 2.921 1.631 2.832
2 C2 C C2 N Y N 0 3.498 1.55 1.651
3 C2A C C2A N N N 0 4.816 2.243 1.417
4 C3 C C3 N Y N 0 2.905 0.838 0.618
5 O3 O O3 N N N 0 3.503 0.758 -0.597
6 C4 C C4 N Y N 0 1.68 0.193 0.855
7 C4A C C4A N N N 0 1.011 -0.581 -0.207
8 C5 C C5 N Y N 0 1.11 0.311 2.128
9 C6 C C6 N Y N 0 1.769 1.045 3.093
10 C5A C C5A N N N 0 -0.205 -0.353 2.44
11 O4P O O4P N N N 0 -0.566 -0.081 3.796
12 P P P N N N 0 -1.974 -0.817 4.059
13 O1P O O1P N N N 0 -1.818 -2.273 3.838
14 O2P O O2P N N N 0 -2.443 -0.552 5.576
15 O3P O O3P N N N 0 -3.081 -0.236 3.045
16 N N N N N N 0 1.555 -0.677 -1.376
17 CA C CA S N N 0 0.891 -1.446 -2.432
18 C C C N N N 0 1.792 -2.569 -2.878
19 O O O N N N 0 1.315 -3.598 -3.293
20 OXT O OXT N N N 0 3.125 -2.425 -2.815
21 CB C CB N N N 0 0.592 -0.529 -3.619
22 CG C CG N Y N 0 -0.308 0.592 -3.173
23 CD1 C CD1 N Y N 0 0.078 1.785 -2.694
24 NE1 N NE1 N Y N 0 -1.017 2.546 -2.393
25 CE2 C CE2 N Y N 0 -2.167 1.844 -2.68
26 CZ2 C CZ2 N Y N 0 -3.522 2.138 -2.568
27 CH2 C CH2 N Y N 0 -4.459 1.202 -2.948
28 CZ3 C CZ3 N Y N 0 -4.065 -0.033 -3.442
29 CE3 C CE3 N Y N 0 -2.74 -0.343 -3.559
30 CD2 C CD2 N Y N 0 -1.773 0.592 -3.186
31 H2A1 H 1H2A N N N 0 5.632 1.564 1.662
32 H2A2 H 2H2A N N N 0 4.89 2.537 0.37
33 H2A3 H 3H2A N N N 0 4.878 3.129 2.048
34 HO3 H HO3 N N N 0 3.174 1.501 -1.12
35 H4A H H4A N N N 0 0.068 -1.067 -0.009
36 H6 H H6 N N N 0 1.335 1.14 4.077
37 H5A1 H 1H5A N N N 0 -0.976 0.035 1.774
38 H5A2 H 2H5A N N N 0 -0.111 -1.429 2.298
39 HOP2 H 2HOP N N N 0 -3.288 -1.009 5.691
40 HOP3 H 3HOP N N N 0 -3.152 0.711 3.222
41 HA H HA N N N 0 -0.041 -1.86 -2.048
42 HXT H HXT N N N 0 3.703 -3.145 -3.101
43 HB1 H 1HB N N N 0 1.525 -0.116 -4.003
44 HB2 H 2HB N N N 0 0.098 -1.101 -4.405
45 HD1 H HD1 N N N 0 1.104 2.097 -2.564
46 HNE H HNE N N N 0 -0.989 3.446 -2.033
47 HZ2 H HZ2 N N N 0 -3.838 3.097 -2.185
48 HH2 H HH2 N N N 0 -5.51 1.433 -2.86
49 HZ3 H HZ3 N N N 0 -4.813 -0.755 -3.735
50 HE3 H HE3 N N N 0 -2.441 -1.307 -3.944