Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PMP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 29


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 1.991 -0.222 2.112
2 C2 C C2 N Y N 0 1.197 -0.071 3.154
3 C4 C C4 N Y N 0 -0.671 0.244 1.691
4 C2A C C2A N N N 0 1.768 -0.159 4.546
5 C3 C C3 N Y N 0 -0.158 0.16 2.982
6 O3 O O3 N N N 0 -0.973 0.315 4.058
7 C4A C C4A N N N 0 -2.137 0.501 1.458
8 N4A N N4A N N N 0 -2.856 -0.778 1.396
9 C5 C C5 N Y N 0 0.198 0.079 0.625
10 C6 C C6 N Y N 0 1.537 -0.155 0.877
11 C5A C C5A N N N 0 -0.309 0.155 -0.791
12 O4P O O4P N N N 0 0.776 -0.046 -1.698
13 P P P N N N 0 0.165 0.046 -3.184
14 O1P O O1P N N N 0 -0.444 1.379 -3.384
15 O2P O O2P N N N 0 1.34 -0.173 -4.262
16 H2A3 H 3H2A N N N 0 2.625 -0.832 4.545
17 O3P O O3P N N N 0 -0.957 -1.091 -3.375
18 H2A1 H 1H2A N N N 0 2.085 0.831 4.871
19 H2A2 H 2H2A N N N 0 1.007 -0.539 5.227
20 HO3 H HO3 N N N 0 -1.305 -0.564 4.286
21 H4A1 H 1H4A N N N 0 -2.535 1.102 2.276
22 H4A2 H 2H4A N N N 0 -2.267 1.037 0.517
23 HNA1 H 1HNA N N N 0 -3.828 -0.558 1.239
24 HNA2 H 2HNA N N N 0 -2.529 -1.253 0.568
25 H6 H H6 N N N 0 2.22 -0.284 0.05
26 H5A1 H 1H5A N N N 0 -1.062 -0.617 -0.949
27 H5A2 H 2H5A N N N 0 -0.752 1.135 -0.967
28 HOP2 H 2HOP N N N 0 0.933 -0.109 -5.137
29 HOP3 H 3HOP N N N 0 -0.519 -1.942 -3.237