Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PNW

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 36


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 1.144 0.79 -0.106
2 N1 N N1 N N N 1 -5.126 -0.394 -0.276
3 O1 O O1 N N N 0 0.081 1.537 0.489
4 C2 C C2 R N N 0 2.467 1.531 0.102
5 O2 O O2 N N N 0 2.414 2.798 -0.557
6 C3 C C3 S N N 0 3.609 0.696 -0.485
7 O3 O O3 N N N 0 4.856 1.345 -0.23
8 C4 C C4 S N N 0 3.607 -0.687 0.174
9 O4 O O4 N N N 0 4.622 -1.5 -0.418
10 C5 C C5 R N N 0 2.239 -1.342 -0.037
11 O5 O O5 N N N 0 1.22 -0.5 0.505
12 C6 C C6 N N N 0 2.209 -2.699 0.67
13 O6 O O6 N N N 0 0.977 -3.361 0.377
14 C7 C C7 N Y N 0 -1.182 1.069 0.303
15 O7 O O7 N N N 0 -6.073 0.2 0.207
16 C8 C C8 N Y N 0 -2.261 1.745 0.853
17 O8 O O8 N N N -1 -5.31 -1.408 -0.926
18 C9 C C9 N Y N 0 -3.543 1.267 0.663
19 C10 C C10 N Y N 0 -3.751 0.116 -0.074
20 C11 C C11 N Y N 0 -2.677 -0.56 -0.623
21 C12 C C12 N Y N 0 -1.393 -0.083 -0.441
22 H1 H H1 N N N 0 0.955 0.676 -1.173
23 H2 H H2 N N N 0 2.636 1.682 1.168
24 HO2 H HO2 N N Y 0 1.709 3.378 -0.238
25 H3 H H3 N N N 0 3.466 0.589 -1.561
26 HO3 H HO3 N N Y 0 4.924 2.23 -0.614
27 H4 H H4 N N N 0 3.8 -0.582 1.242
28 HO4 H HO4 N N Y 0 5.516 -1.142 -0.326
29 H5 H H5 N N N 0 2.065 -1.484 -1.103
30 H61 H H6 N N N 0 3.042 -3.309 0.321
31 H62 H H6A N N N 0 2.294 -2.549 1.747
32 HO6 H HO6 N N Y 0 0.889 -4.229 0.794
33 H8 H H8 N N N 0 -2.099 2.644 1.43
34 H9 H H9 N N N 0 -4.384 1.792 1.091
35 H11 H H11 N N N 0 -2.842 -1.459 -1.198
36 H12 H H12 N N N 0 -0.555 -0.608 -0.874