Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Q0D

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 0.757 2.455 -0.696
2 C2 C C2 N Y N 0 -0.438 2.309 -1.407
3 C4 C C3 N N N 0 -3.997 0.375 -0.647
4 C5 C C4 N N N 0 -5.361 0.12 -1.291
5 C6 C C5 N Y N 0 -6.202 -0.724 -0.368
6 C15 C C6 N Y N 0 2.908 -0.624 1.132
7 C19 C C7 N Y N 0 3.517 -3.877 -1.42
8 C23 C C8 N Y N 0 4.346 -1.868 -0.318
9 C24 C C9 N Y N 0 4.125 -0.78 0.542
10 O3 O O1 N N N 0 1.565 0.37 3.067
11 S1 S S1 N N N 0 2.635 0.743 2.21
12 C17 C C14 N Y N 0 2.05 -2.588 0.059
13 O2 O O2 N N N 0 3.913 1.138 2.689
14 C22 C C10 N Y N 0 5.589 -2.062 -0.946
15 C21 C C11 N Y N 0 5.766 -3.127 -1.773
16 C20 C C12 N Y N 0 4.733 -4.032 -2.01
17 C18 C C13 N Y N 0 3.295 -2.788 -0.559
18 C16 C C15 N Y N 0 1.873 -1.525 0.891
19 N N N1 N N N 0 2.076 1.995 1.282
20 C14 C C16 N Y N 0 0.891 1.856 0.566
21 C C C17 N N N 0 1.871 3.228 -1.271
22 O1 O O3 N N N 0 2.908 3.353 -0.65
23 O O O4 N N N 0 1.74 3.797 -2.485
24 C13 C C18 N Y N 0 -0.162 1.123 1.098
25 C12 C C19 N Y N 0 -1.337 0.984 0.389
26 C3 C C20 N Y N 0 -1.478 1.576 -0.863
27 S S S2 N N N 0 -2.984 1.391 -1.758
28 C11 C C21 N Y N 0 -7.016 -0.12 0.572
29 C10 C C22 N Y N 0 -7.787 -0.895 1.419
30 C9 C C23 N Y N 0 -7.744 -2.273 1.325
31 C8 C C24 N Y N 0 -6.93 -2.877 0.386
32 C7 C C25 N Y N 0 -6.163 -2.102 -0.465
33 H1 H H1 N N N 0 -0.549 2.767 -2.379
34 H2 H H2 N N N 0 -4.133 0.897 0.3
35 H3 H H3 N N N 0 -3.496 -0.577 -0.469
36 H4 H H4 N N N 0 -5.862 1.072 -1.469
37 H5 H H5 N N N 0 -5.225 -0.402 -2.238
38 H6 H H6 N N N 0 2.725 -4.586 -1.613
39 H7 H H7 N N N 0 4.916 -0.07 0.735
40 H8 H H8 N N N 0 6.399 -1.369 -0.772
41 H9 H H9 N N N 0 6.722 -3.274 -2.254
42 H10 H H10 N N N 0 4.901 -4.87 -2.671
43 H11 H H11 N N N 0 1.237 -3.277 -0.122
44 H12 H H12 N N N 0 0.918 -1.379 1.372
45 H13 H H13 N N N 0 2.574 2.826 1.238
46 H14 H H14 N N N 0 2.498 4.295 -2.821
47 H15 H H15 N N N 0 -0.061 0.661 2.069
48 H16 H H16 N N N 0 -2.153 0.413 0.808
49 H17 H H17 N N N 0 -7.049 0.957 0.645
50 H18 H H18 N N N 0 -8.422 -0.423 2.153
51 H19 H H19 N N N 0 -8.346 -2.878 1.987
52 H20 H H20 N N N 0 -6.896 -3.954 0.313
53 H21 H H21 N N N 0 -5.528 -2.574 -1.2