Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : QBT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -4.136 1.144 -0.03
2 O1P O O1P N N N 0 -5.413 0.188 0.191
3 O2P O O2P N N N 0 -3.797 1.817 1.244
4 O5' O O5' N N N 0 -2.882 0.26 -0.52
5 C5' C C5' N N N 0 -2.268 -0.739 0.297
6 C4' C C4' R N N 0 -1.112 -1.385 -0.47
7 O4' O O4' N N N 0 -0.053 -0.429 -0.692
8 C3' C C3' S N N 0 -0.435 -2.484 0.387
9 O3' O O3' N N N 0 -1.105 -3.736 0.234
10 C2' C C2' N N N 0 0.987 -2.54 -0.223
11 C1' C C1' R N N 0 1.147 -1.182 -0.934
12 N1 N N1 N N N 0 2.303 -0.467 -0.387
13 C2 C C2 N N N 0 2.293 -0.079 0.899
14 O2 O O2 N N N 0 1.37 -0.418 1.614
15 N3 N N3 N N N 0 3.278 0.676 1.414
16 C4 C C4 N N N 0 4.184 1.27 0.616
17 O4 O O4 N N N 0 5.112 1.88 1.102
18 C5 C C5 S N N 0 4.045 1.177 -0.882
19 C6 C C6 N N N 0 3.455 -0.191 -1.247
20 C5M C C5M N N N 0 5.421 1.328 -1.534
21 O3P O O3P N N Y 0 -4.481 2.251 -1.146
22 H1P H H1P N N N 0 -5.691 -0.286 -0.604
23 H5'1 H H5'1 N N N 0 -1.887 -0.28 1.209
24 H5'2 H H5'2 N N N 0 -3.004 -1.501 0.554
25 H4' H H4' N N N 0 -1.464 -1.795 -1.417
26 H3' H H3' N N N 0 -0.397 -2.19 1.436
27 H1' H H1' N N N 0 1.278 -1.338 -2.005
28 HA H HA N N N 0 -0.718 -4.456 0.751
29 H2'1 H H2'1 N N N 0 1.735 -2.651 0.562
30 H2'2 H H2'2 N N N 0 1.062 -3.358 -0.941
31 H61C H H61C N N N 0 4.208 -0.965 -1.104
32 H62C H H62C N N N 0 3.135 -0.182 -2.289
33 H3 H H3 N N N 0 3.336 0.794 2.375
34 H52 H H52 N N N 0 6.079 0.534 -1.181
35 H53 H H53 N N N 0 5.319 1.26 -2.617
36 H54 H H54 N N N 0 5.845 2.296 -1.269
37 H3P H H3P N N N 0 -5.228 2.821 -0.918
38 H5M H H5M N N N 0 3.385 1.969 -1.237