Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : QDK

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 20


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -2.009 -0.88 -0.44
2 O1 O O1 N N N 0 -3.304 -0.93 0.163
3 C2 C C2 N N N 0 -1.311 0.39 -0.025
4 O2 O O2 N N N 0 -1.865 1.171 0.711
5 C3 C C3 S N N 0 0.079 0.684 -0.528
6 O3 O O3 N N N 0 0.387 2.061 -0.299
7 C4 C C4 S N N 0 1.087 -0.194 0.215
8 O4 O O4 N N N 0 0.78 -1.571 -0.014
9 C5 C C5 N N N 0 2.498 0.105 -0.296
10 O5 O O5 N N N 0 3.45 -0.629 0.477
11 H11 H H1 N N N 0 -1.423 -1.739 -0.114
12 H12 H H1A N N N 0 -2.112 -0.9 -1.525
13 HO1 H HO1 N N N 0 -3.811 -1.722 -0.061
14 H3 H H3 N N N 0 0.131 0.474 -1.596
15 HO3 H HO3 N N N 0 0.36 2.32 0.632
16 H4 H H4 N N N 0 1.036 0.017 1.283
17 HO4 H HO4 N N N 0 0.807 -1.83 -0.946
18 H51 H H5 N N N 0 2.576 -0.189 -1.343
19 H52 H H5A N N N 0 2.7 1.172 -0.203
20 HO5 H HO5 N N N 0 4.368 -0.487 0.207