Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : QSQ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1' C C1 R N N 0 -0.14 -0.097 -0.55
2 C2 C C2 N Y N 0 -4.399 -1.118 -1.533
3 C2' C C3 R N N 0 -0.281 1.24 0.211
4 C23 C C4 N N N 0 -1.753 3.131 0.275
5 C3' C C5 R N N 0 1.168 1.763 0.322
6 C4 C C6 N Y N 0 -2.38 -1.271 -0.445
7 C4' C C7 R N N 0 2.014 0.68 -0.385
8 C5 C C8 N Y N 0 -2.894 -2.318 0.338
9 C5' C C9 N N N 0 3.347 0.488 0.34
10 C6 C C10 N Y N 0 -4.221 -2.723 0.116
11 C8 C C11 N Y N 0 -0.845 -1.987 0.966
12 F24 F F1 N N N 0 -2.593 2.486 1.188
13 F25 F F2 N N N 0 -2.512 3.973 -0.544
14 F26 F F3 N N N 0 -0.802 3.887 0.969
15 N1 N N1 N Y N 0 -4.925 -2.098 -0.822
16 N3 N N2 N Y N 0 -3.161 -0.705 -1.36
17 N6 N N3 N N N 0 -4.782 -3.749 0.856
18 N7 N N4 N Y N 0 -1.906 -2.71 1.178
19 N9 N N5 N Y N 0 -1.087 -1.085 -0.026
20 O2' O O1 N N N 0 -1.088 2.156 -0.532
21 O3' O O2 N N N 0 1.301 3.018 -0.348
22 O4' O O3 N N N 0 1.218 -0.522 -0.302
23 O5' O O4 N N N 0 4.16 -0.43 -0.393
24 OP1 O O5 N N N 0 5.325 -2.152 1.0
25 OP2 O O6 N N N 0 6.229 -1.545 -1.253
26 P P P1 N N N 0 5.636 -0.867 0.081
27 H1 H H1 N N N 0 -0.301 0.053 -1.618
28 H2 H H2 N N N 0 -5.005 -0.64 -2.288
29 H3 H H3 N N N 0 -0.704 1.072 1.201
30 H4 H H4 N N N 0 1.462 1.855 1.368
31 H5 H H5 N N N 0 2.185 0.953 -1.426
32 H6 H H6 N N N 0 3.861 1.446 0.418
33 H7 H H7 N N N 0 3.164 0.093 1.339
34 H8 H H8 N N N 0 0.09 -2.088 1.498
35 H9 H H9 N N N 0 -4.257 -4.198 1.538
36 H10 H H10 N N N 0 -5.699 -4.02 0.694
37 H11 H H11 N N N 0 2.191 3.393 -0.31
38 H12 H H12 N N N 0 6.113 -2.561 1.383
39 H13 H H13 N N N 0 7.132 -1.877 -1.158