Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : QVV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 62


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C17 C C1 N N N 0 3.014 1.774 2.512
2 C16 C C2 N N N 0 1.597 -0.169 1.834
3 C15 C C3 N N N 0 2.451 0.993 1.323
4 C22 C C4 N Y N 0 -6.681 -2.795 -1.894
5 C19 C C5 N Y N 0 -6.218 -1.526 -0.035
6 C20 C C6 N Y N 0 -7.58 -1.554 0.31
7 C21 C C7 N Y N 0 -8.462 -2.256 -0.528
8 C01 C C8 N N N 0 1.462 3.785 -0.92
9 C02 C C9 N N N 0 0.021 3.527 -1.033
10 C03 C C10 N N N 0 -0.496 2.44 -0.348
11 C04 C C11 N N N 0 -1.941 2.128 -0.423
12 C05 C C12 N N N 0 -3.867 0.76 0.172
13 C06 C C13 N N N 0 -4.166 -0.482 1.015
14 C07 C C14 N N N 0 1.602 1.908 0.479
15 C18 C C15 N Y N 0 -6.552 -0.399 1.83
16 N01 N N1 N N N 0 2.197 2.947 -0.156
17 N02 N N2 N N N 0 -2.437 1.068 0.246
18 N03 N N3 N N N 0 0.327 1.669 0.386
19 N04 N N4 N N N 0 3.556 0.469 0.516
20 N05 N N5 N Y N 0 -5.596 -0.79 0.942
21 N06 N N6 N Y N 0 -7.716 -0.848 1.458
22 N07 N N7 N Y N 0 -5.818 -2.154 -1.136
23 N08 N N8 N N N 0 -9.814 -2.319 -0.24
24 N09 N N9 N Y N 0 -7.97 -2.85 -1.611
25 O01 O O1 N N N 0 1.98 4.722 -1.502
26 O02 O O2 N N N 0 -0.778 4.327 -1.783
27 O03 O O3 N N N 0 -2.68 2.827 -1.087
28 H1 H H1 N N N 0 3.628 1.112 3.123
29 H2 H H2 N N N 0 3.623 2.602 2.148
30 H3 H H3 N N N 0 2.192 2.164 3.113
31 H4 H H4 N N N 0 0.775 0.222 2.434
32 H5 H H5 N N N 0 1.196 -0.725 0.987
33 H6 H H6 N N N 0 2.211 -0.83 2.445
34 H7 H H7 N N N 0 -6.323 -3.291 -2.784
35 H8 H H8 N N N 0 -4.145 0.57 -0.864
36 H9 H H9 N N N 0 -4.442 1.604 0.554
37 H10 H H10 N N N 0 -3.592 -1.326 0.634
38 H11 H H11 N N N 0 -3.888 -0.292 2.052
39 H12 H H12 N N N 0 -6.372 0.196 2.714
40 H13 H H13 N N N 0 3.151 3.09 -0.061
41 H14 H H14 N N N 0 -1.847 0.51 0.777
42 H15 H H15 N N N 0 3.643 0.73 -0.414
43 H18 H H18 N N N 0 -10.163 -1.875 0.549
44 H19 H H19 N N N 0 -10.413 -2.807 -0.826
45 H20 H H20 N N N 0 -0.311 5.055 -2.216
46 C1 C C16 N N N 0 4.45 -0.376 1.066
47 O1 O O4 N N N 0 5.465 -0.858 0.324
48 C3 C C17 N N N 0 6.391 -1.763 0.983
49 C4 C C18 N Y N 0 7.452 -2.195 0.004
50 O2 O O5 N N N 0 4.34 -0.703 2.231
51 C2 C C19 N Y N 0 8.618 -1.463 -0.12
52 C5 C C20 N Y N 0 9.591 -1.859 -1.018
53 C6 C C21 N Y N 0 9.399 -2.989 -1.792
54 C7 C C22 N Y N 0 8.233 -3.721 -1.667
55 C8 C C23 N Y N 0 7.262 -3.327 -0.766
56 H16 H H16 N N N 0 6.859 -1.254 1.825
57 H17 H H17 N N N 0 5.849 -2.638 1.342
58 H21 H H21 N N N 0 8.768 -0.58 0.484
59 H22 H H22 N N N 0 10.502 -1.287 -1.115
60 H23 H H23 N N N 0 10.159 -3.298 -2.494
61 H24 H H24 N N N 0 8.083 -4.604 -2.272
62 H25 H H25 N N N 0 6.351 -3.9 -0.669