Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : R0D

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 -0.178 0.979 0.663
2 C13 C C2 R N N 0 -2.705 0.078 -0.297
3 C17 C C3 N Y N 0 -6.261 -0.531 1.695
4 C20 C C4 N Y N 0 -5.962 -1.434 -0.905
5 C21 C C5 N Y N 0 -4.962 -0.67 -0.321
6 C24 C C6 N N N 0 0.489 1.704 -1.667
7 C26 C C7 N Y N 0 3.551 0.24 0.131
8 C02 C C8 N Y N 0 5.346 -1.335 0.155
9 C03 C C9 N Y N 0 6.185 -0.372 0.688
10 C04 C C10 N Y N 0 5.717 0.899 0.947
11 C05 C C11 N Y N 0 4.385 1.225 0.67
12 C07 C C12 N N N 0 2.458 2.32 0.461
13 C08 C C13 N N N 0 2.215 0.916 -0.042
14 C09 C C14 N N N 0 1.149 0.225 0.801
15 C12 C C15 N N N 0 -1.696 0.687 -1.236
16 C14 C C16 N N N 0 -3.174 1.133 0.714
17 C16 C C17 N Y N 0 -5.112 -0.218 0.984
18 C18 C C18 N Y N 0 -7.254 -1.292 1.107
19 C19 C C19 N Y N 0 -7.104 -1.743 -0.192
20 C25 C C20 N N N 0 1.81 0.942 -1.516
21 C27 C C21 N Y N 0 4.023 -1.023 -0.123
22 N06 N N1 N N N 0 3.688 2.39 0.833
23 N11 N N2 N N N 0 -0.505 1.108 -0.764
24 O15 O O1 N N N 0 -4.14 0.526 1.579
25 O22 O O2 N N N 0 -3.846 -0.369 -1.039
26 O23 O O3 N N N 0 -1.954 0.798 -2.415
27 CL01 CL CL1 N N N 0 5.948 -2.931 -0.166
28 H1 H H1 N N N 0 -0.968 0.425 1.17
29 H2 H H2 N N N 0 -0.084 1.97 1.107
30 H3 H H3 N N N 0 -2.257 -0.764 0.23
31 H4 H H4 N N N 0 -6.381 -0.18 2.709
32 H5 H H5 N N N 0 -5.847 -1.788 -1.919
33 H6 H H6 N N N 0 0.639 2.751 -1.406
34 H7 H H7 N N N 0 0.138 1.63 -2.697
35 H8 H H8 N N N 0 7.215 -0.618 0.903
36 H9 H H9 N N N 0 6.379 1.643 1.363
37 H10 H H10 N N N 0 1.733 3.119 0.501
38 H11 H H11 N N N 0 1.458 0.221 1.846
39 H12 H H12 N N N 0 1.021 -0.801 0.456
40 H13 H H13 N N N 0 -2.324 1.483 1.301
41 H14 H H14 N N N 0 -3.628 1.972 0.187
42 H15 H H15 N N N 0 -8.148 -1.534 1.662
43 H16 H H16 N N N 0 -7.881 -2.338 -0.648
44 H17 H H17 N N N 0 1.685 -0.079 -1.877
45 H18 H H18 N N N 0 2.586 1.441 -2.097
46 H19 H H19 N N N 0 3.366 -1.772 -0.538