Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : R5D

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 51


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N3 N N1 N N N 0 -2.451 0.567 -0.023
2 C4 C C1 N N N 0 -7.014 2.424 0.088
3 N2 N N2 N Y N 0 -5.926 0.177 0.628
4 C7 C C2 N Y N 0 -1.982 -2.818 0.986
5 C6 C C3 N Y N 0 -1.822 -0.633 0.265
6 C9 C C4 N Y N 0 0.119 -1.873 0.354
7 C13 C C5 S N N 0 3.391 -1.156 -1.034
8 C8 C C6 N Y N 0 -0.618 -2.966 0.82
9 N5 N N3 N Y N 0 -0.512 -0.732 0.097
10 C18 C C7 R N N 0 6.005 2.842 0.549
11 C16 C C8 R N N 0 5.971 1.33 0.314
12 C19 C C9 N N N 0 7.284 3.536 0.33
13 C1 C C10 N Y N 0 -4.713 -0.312 0.597
14 C2 C C11 N Y N 0 -3.842 0.692 0.149
15 C3 C C12 N Y N 0 -4.58 1.807 -0.089
16 N1 N N4 N Y N 0 -5.875 1.511 0.201
17 C5 C C13 N N N 0 -8.087 1.793 -0.802
18 O1 O O1 N N N 0 -9.199 2.684 -0.913
19 N4 N N5 N Y N 0 -2.547 -1.653 0.701
20 N6 N N6 N N N 0 1.491 -1.973 0.177
21 C10 C C14 N N N 0 1.824 -3.026 -0.817
22 C11 C C15 R N N 0 3.246 -2.668 -1.301
23 C12 C C16 N N N 0 3.385 -1.689 -2.468
24 C14 C C17 N N N 0 2.045 -0.727 -0.412
25 N7 N N7 N N N 0 4.622 -0.584 -0.482
26 C15 C C18 N N N 0 4.706 0.742 -0.254
27 O2 O O2 N N N 0 3.763 1.462 -0.507
28 C17 C C19 N N N 0 5.915 1.884 1.739
29 N8 N N8 N N N 0 8.272 4.071 0.161
30 F1 F F1 N N N 0 -0.011 -4.139 1.102
31 H11 H H1 N N N 0 -1.931 1.323 -0.338
32 H7 H H2 N N N 0 -7.429 2.613 1.078
33 H6 H H3 N N N 0 -6.684 3.365 -0.353
34 H12 H H4 N N N 0 -2.582 -3.643 1.34
35 H3 H H5 N N N 0 5.111 3.411 0.293
36 H2 H H6 N N N 0 6.897 0.85 -0.003
37 H4 H H7 N N N 0 -4.43 -1.318 0.87
38 H5 H H8 N N N 0 -4.207 2.756 -0.443
39 H8 H H9 N N N 0 -7.672 1.605 -1.793
40 H9 H H10 N N N 0 -8.417 0.853 -0.362
41 H10 H H11 N N N 0 -9.918 2.348 -1.464
42 H14 H H12 N N N 0 1.82 -4.009 -0.345
43 H13 H H13 N N N 0 1.12 -3.0 -1.648
44 H1 H H14 N N N 0 4.048 -3.37 -1.075
45 H16 H H15 N N N 0 2.498 -1.498 -3.072
46 H15 H H16 N N N 0 4.331 -1.684 -3.01
47 H17 H H17 N N N 0 2.206 0.021 0.365
48 H18 H H18 N N N 0 1.376 -0.34 -1.181
49 H19 H H19 N N N 0 5.376 -1.16 -0.279
50 H20 H H20 N N N 0 6.804 1.768 2.36
51 H21 H H21 N N N 0 4.963 1.823 2.266