Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : R5G

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 -0.65 3.399 -0.118
2 C13 C C2 N Y N 0 -1.72 1.442 0.142
3 C15 C C3 N Y N 0 -3.274 -0.365 -0.17
4 C20 C C4 N Y N 0 -3.887 0.336 -1.219
5 C21 C C5 N Y N 0 -3.424 1.561 -1.592
6 C22 C C6 N Y N 0 2.504 1.693 0.739
7 C03 C C7 N N N 0 4.573 -1.262 -0.307
8 C04 C C8 N Y N 0 3.451 -0.45 0.212
9 C05 C C9 N Y N 0 2.285 -1.071 0.662
10 C06 C C10 N Y N 0 1.245 -0.308 1.15
11 C07 C C11 N Y N 0 1.351 1.071 1.183
12 C08 C C12 N N N 0 0.206 1.899 1.706
13 C11 C C13 N Y N 0 -1.613 3.395 -1.056
14 C12 C C14 N Y N 0 -2.338 2.132 -0.92
15 C14 C C15 N Y N 0 -2.194 0.193 0.512
16 C16 C C16 N N N 0 -3.785 -1.692 0.224
17 C23 C C17 N Y N 0 3.554 0.941 0.254
18 N02 N N1 N N N 0 5.697 -0.659 -0.741
19 N09 N N2 N Y N 0 -0.695 2.24 0.603
20 N17 N N3 N N N 0 -4.839 -2.227 -0.424
21 O01 O O1 N N N 0 6.771 -1.437 -1.237
22 O18 O O2 N N N 0 -5.329 -3.501 -0.045
23 O19 O O3 N N N 0 -3.256 -2.302 1.133
24 O24 O O4 N N N 0 4.48 -2.474 -0.341
25 H1 H H1 N N N 0 0.058 4.2 0.04
26 H2 H H2 N N N 0 -4.73 -0.099 -1.734
27 H3 H H3 N N N 0 -3.895 2.092 -2.407
28 H4 H H4 N N N 0 2.581 2.77 0.768
29 H5 H H5 N N N 0 2.199 -2.148 0.632
30 H6 H H6 N N N 0 0.342 -0.787 1.498
31 H7 H H7 N N N 0 -0.34 1.33 2.459
32 H8 H H8 N N N 0 0.594 2.814 2.154
33 H9 H H9 N N N 0 -1.814 4.177 -1.773
34 H10 H H10 N N N 0 -1.73 -0.345 1.324
35 H11 H H11 N N N 0 4.454 1.428 -0.093
36 H12 H H12 N N N 0 5.771 0.307 -0.713
37 H13 H H13 N N N 0 -5.261 -1.741 -1.149
38 H14 H H14 N N N 0 7.534 -0.917 -1.525
39 H15 H H15 N N N 0 -6.086 -3.801 -0.567