Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RAB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 32


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5' O O5' N N N 0 -4.487 2.021 -0.98
2 C5' C C5' N N N 0 -4.245 1.029 0.019
3 C4' C C4' R N N 0 -3.145 0.08 -0.459
4 O4' O O4' N N N 0 -1.885 0.78 -0.558
5 C1' C C1' R N N 0 -0.874 -0.25 -0.523
6 N9 N N9 N Y N 0 0.418 0.317 -0.127
7 C4 C C4 N Y N 0 1.654 -0.222 -0.382
8 N3 N N3 N Y N 0 2.092 -1.314 -1.001
9 C2 C C2 N Y N 0 3.381 -1.565 -1.085
10 N1 N N1 N Y N 0 4.295 -0.763 -0.571
11 C6 C C6 N Y N 0 3.952 0.352 0.066
12 N6 N N6 N N N 0 4.917 1.187 0.602
13 C5 C C5 N Y N 0 2.587 0.661 0.187
14 N7 N N7 N Y N 0 1.886 1.679 0.742
15 C8 C C8 N Y N 0 0.613 1.477 0.562
16 C2' C C2' S N N 0 -1.368 -1.256 0.541
17 O2' O O2' N N N 0 -0.783 -0.969 1.813
18 C3' C C3' S N N 0 -2.898 -1.031 0.585
19 O3' O O3' N N N 0 -3.59 -2.226 0.218
20 H5' H H5' N N N 0 -5.185 2.597 -0.64
21 H5'1 H 1H5' N N N 0 -5.16 0.464 0.199
22 H5'2 H 2H5' N N N 0 -3.93 1.513 0.944
23 H4' H H4' N N N 0 -3.413 -0.356 -1.421
24 H1' H H1' N N N 0 -0.792 -0.736 -1.495
25 H2 H H2 N N N 0 3.704 -2.462 -1.594
26 HN61 H 1HN6 N N N 0 5.856 0.961 0.515
27 HN62 H 2HN6 N N N 0 4.654 2.0 1.061
28 H8 H H8 N N N 0 -0.174 2.132 0.907
29 H2' H H2' N N N 0 -1.14 -2.278 0.239
30 H1 H H1 N N N 0 -1.175 -1.585 2.446
31 H3' H H3' N N N 0 -3.208 -0.7 1.576
32 H3 H H3 N N N 0 -4.533 -2.009 0.204