Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : RDN

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C18 C C1 N N N 0 -3.869 0.281 -1.496
2 N1 N N1 N N N 0 -0.424 -0.009 -0.036
3 C16 C C2 N N N 0 -2.823 2.111 -1.228
4 C17 C C3 N N N 0 -4.314 1.747 -1.342
5 C15 C C4 N N N 0 -2.597 0.677 -0.747
6 C14 C C5 N N N 0 -1.303 0.011 -1.235
7 C13 C C6 N Y N 0 1.167 -3.179 -0.464
8 O2 O O1 N N N 0 -3.84 -1.528 1.069
9 C12 C C7 N Y N 0 2.873 -1.653 -0.202
10 C11 C C8 N Y N 0 2.268 1.944 0.312
11 C10 C C9 N Y N 0 3.227 2.919 0.477
12 C9 C C10 N Y N 0 4.573 2.585 0.459
13 C8 C C11 N Y N 0 4.968 1.277 0.276
14 C7 C C12 N Y N 0 4.015 0.278 0.108
15 C6 C C13 N Y N 0 2.653 0.618 0.126
16 C5 C C14 N Y N 0 1.913 -0.637 -0.075
17 C4 C C15 N Y N 0 0.557 -0.977 -0.155
18 C3 C C16 N N N 0 -1.342 -0.318 1.091
19 C2 C C17 R N N 0 -2.632 0.473 0.772
20 C1 C C18 N N N 0 -3.848 -0.324 1.168
21 O1 O O2 N N N 0 -4.941 0.304 1.629
22 N2 N N2 N Y N 0 4.12 -1.089 -0.09
23 N3 N N3 N Y N 0 2.452 -2.903 -0.394
24 N4 N N4 N Y N 0 0.234 -2.253 -0.35
25 H16 H H1 N N N 0 -4.495 -0.426 -0.952
26 H17 H H2 N N N 0 -3.693 -0.017 -2.53
27 H12 H H3 N N N 0 -2.353 2.33 -2.187
28 H13 H H4 N N N 0 -2.613 2.865 -0.47
29 H14 H H5 N N N 0 -4.796 2.153 -2.232
30 H15 H H6 N N N 0 -4.881 1.936 -0.431
31 H11 H H7 N N N 0 -0.849 0.6 -2.032
32 H10 H H8 N N N 0 -1.503 -1.005 -1.577
33 H9 H H9 N N N 0 0.864 -4.203 -0.626
34 H7 H H10 N N N 0 1.22 2.206 0.327
35 H6 H H11 N N N 0 2.93 3.947 0.621
36 H5 H H12 N N N 0 5.318 3.356 0.588
37 H4 H H13 N N N 0 6.019 1.028 0.263
38 H2 H H14 N N N 0 -1.552 -1.387 1.129
39 H3 H H15 N N N 0 -0.912 0.018 2.035
40 H1 H H16 N N N 0 -2.625 1.435 1.286
41 H18 H H17 N N N 0 -5.697 -0.25 1.87
42 H8 H H18 N N N 0 4.956 -1.578 -0.142