Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RGT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 70


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2P O O2P N N N 0 9.961 2.586 0.291
2 P P P N N N 0 10.046 1.282 -0.649
3 O3P O O3P N N N 0 9.624 1.636 -2.023
4 O1P O O1P N N N 0 11.561 0.738 -0.677
5 O5R O O5R N N N 0 9.075 0.137 -0.068
6 C5R C C5R N N N 0 8.848 -1.105 -0.737
7 C4R C C4R R N N 0 7.878 -1.957 0.084
8 O4R O O4R N N N 0 6.581 -1.339 0.104
9 C3R C C3R S N N 0 7.719 -3.345 -0.568
10 O3R O O3R N N N 0 8.132 -4.372 0.334
11 C2R C C2R R N N 0 6.202 -3.454 -0.86
12 O2R O O2R N N N 0 5.719 -4.765 -0.561
13 C1R C C1R S N N 0 5.607 -2.405 0.119
14 O6 O O6 N N N 0 4.341 -1.936 -0.35
15 C6 C C6 N Y N 0 3.701 -1.021 0.417
16 C5 C C5 N Y N 0 2.453 -0.508 0.03
17 C4 C C4 N Y N 0 1.834 0.438 0.864
18 N3 N N3 N Y N 0 2.444 0.814 1.982
19 C2 C C2 N Y N 0 3.621 0.305 2.309
20 N2 N N2 N N N 0 4.228 0.72 3.483
21 N1 N N1 N Y N 0 4.237 -0.596 1.553
22 N7 N N7 N Y N 0 1.628 -0.709 -1.028
23 C8 C C8 N Y N 0 0.569 0.035 -0.898
24 N9 N N9 N Y N 0 0.648 0.762 0.254
25 C1' C C1' R N N 0 -0.35 1.714 0.748
26 C2' C C2' R N N 0 -0.028 3.139 0.247
27 O2' O O2' N N N 0 0.654 3.884 1.258
28 C3' C C3' S N N 0 -1.414 3.759 -0.04
29 O3' O O3' N N N 0 -1.631 4.904 0.786
30 O4' O O4' N N N 0 -1.649 1.413 0.194
31 C4' C C4' R N N 0 -2.409 2.634 0.322
32 C5' C C5' N N N 0 -3.589 2.632 -0.653
33 O5' O O5' N N N 0 -4.552 1.664 -0.233
34 PA P PA R N N 0 -5.925 1.392 -1.029
35 O1A O O1A N N N 0 -5.592 0.791 -2.485
36 O2A O O2A N N N 0 -6.669 2.662 -1.178
37 O3A O O3A N N N 0 -6.822 0.338 -0.206
38 PB P PB R N N 0 -8.367 -0.11 -0.275
39 O1B O O1B N N N 0 -8.757 -0.32 -1.687
40 O2B O O2B N N N 0 -9.289 1.041 0.371
41 O3B O O3B N N N 0 -8.566 -1.48 0.546
42 PG P PG N N N 0 -9.689 -2.634 0.542
43 O1G O O1G N N N 0 -9.613 -3.462 1.92
44 O3G O O3G N N N 0 -11.028 -2.018 0.41
45 O2G O O2G N N N 0 -9.432 -3.629 -0.697
46 HO2P H HO2P N N N 0 10.522 3.318 0.0
47 HO1P H HO1P N N N 0 11.904 0.486 0.192
48 H5R H H5R N N N 0 8.421 -0.915 -1.722
49 H5RA H H5RA N N N 0 9.794 -1.636 -0.848
50 H4R H H4R N N N 0 8.252 -2.067 1.102
51 H3R H H3R N N N 0 8.29 -3.399 -1.495
52 HO3R H HO3R N N N 0 8.053 -5.267 -0.025
53 H2R H H2R N N N 0 5.985 -3.188 -1.895
54 HO2R H HO2R N N N 0 4.773 -4.883 -0.728
55 H1R H H1R N N N 0 5.514 -2.826 1.12
56 HN2 H HN2 N N N 0 3.789 1.374 4.05
57 HN2A H HN2A N N N 0 5.09 0.358 3.738
58 H8 H H8 N N N 0 -0.252 0.072 -1.599
59 H1' H H1' N N N 0 -0.387 1.692 1.837
60 H2' H H2' N N N 0 0.568 3.098 -0.665
61 HO2' H HO2' N N N 0 0.881 4.787 0.996
62 H3' H H3' N N N 0 -1.504 4.023 -1.094
63 HO3' H HO3' N N N 0 -0.995 5.619 0.642
64 H4' H H4' N N N 0 -2.763 2.756 1.346
65 HO2G H HO2G N N N 0 -8.571 -4.069 -0.676
66 H5' H H5' N N N 0 -4.049 3.62 -0.669
67 H5'A H H5'A N N N 0 -3.233 2.381 -1.652
68 HO1A H HO1A N N N 0 -5.104 -0.043 -2.463
69 HO2B H HO2B N N N 0 -9.089 1.232 1.297
70 HO1G H HO1G N N N 0 -10.263 -4.175 1.987