Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RIL

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 41


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -3.829 -1.717 -1.835
2 C2 C C2 N N N 0 -3.08 -0.715 -1.362
3 C5 C C5 N N N 0 -1.581 -0.743 -1.304
4 C7 C C7 N N N 0 -1.076 -0.539 0.126
5 C10 C C10 N N N 0 0.453 -0.537 0.177
6 C13 C C13 N N N 0 0.982 -0.311 1.588
7 P16 P P16 S N N 0 2.784 -0.373 1.705
8 O20 O O20 N N N 0 3.347 -1.684 1.275
9 O21 O O21 N N N 0 3.302 0.911 0.883
10 C23 C C23 N N N 0 2.932 2.227 1.254
11 C24 C C24 S N N 0 3.573 3.208 0.296
12 C27 C C27 N N N 0 3.241 4.652 0.584
13 O28 O O28 N N N 0 3.068 3.02 -1.029
14 C30 C C30 N N N 0 3.206 4.306 -1.657
15 O31 O O31 N N N 0 3.502 5.3 -0.662
16 C34 C C34 N N N 0 4.357 4.258 -2.654
17 C38 C C38 N N N 0 1.892 4.655 -2.343
18 O1 O O1 N N N 0 3.071 0.037 3.237
19 H11 H 1H1 N N N 0 -4.911 -1.654 -1.858
20 H12 H 2H1 N N N 0 -3.363 -2.622 -2.208
21 H2 H H2 N N N 0 -3.577 0.184 -1.006
22 H51 H 1H5 N N N 0 -1.196 -1.691 -1.699
23 H52 H 2H5 N N N 0 -1.193 0.052 -1.952
24 H71 H 1H7 N N N 0 -1.463 -1.336 0.773
25 H72 H 2H7 N N N 0 -1.462 0.409 0.52
26 H101 H 1H10 N N N 0 0.832 -1.497 -0.194
27 H102 H 2H10 N N N 0 0.841 0.247 -0.484
28 H131 H 1H13 N N N 0 0.639 0.653 1.978
29 H132 H 2H13 N N N 0 0.588 -1.091 2.248
30 H231 H 1H23 N N N 0 1.842 2.31 1.216
31 H232 H 2H23 N N N 0 3.271 2.413 2.277
32 H24 H H24 N N N 0 4.657 3.053 0.265
33 H271 H 1H27 N N N 0 2.181 4.795 0.826
34 H272 H 2H27 N N N 0 3.853 5.088 1.378
35 H341 H 1H34 N N N 0 4.226 5.021 -3.428
36 H342 H 2H34 N N N 0 5.311 4.439 -2.15
37 H343 H 3H34 N N N 0 4.404 3.279 -3.141
38 H381 H 1H38 N N N 0 1.885 4.284 -3.372
39 H382 H 2H38 N N N 0 1.049 4.206 -1.809
40 H383 H 3H38 N N N 0 1.747 5.739 -2.366
41 HO1 H HO1 N N N 0 3.668 -0.537 3.763