Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RLP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O19 O O19 N N N 0 -2.916 1.119 -6.156
2 C18 C C18 N N N 0 -2.584 0.205 -5.23
3 O18 O O18 N N N 0 -3.12 -0.876 -5.23
4 C17 C C17 N N N 0 -1.542 0.531 -4.19
5 C16 C C16 N N N 0 -1.354 -0.671 -3.264
6 C7 C C7 N Y N 0 -0.312 -0.346 -2.224
7 C8 C C8 N Y N 0 -0.704 0.23 -1.018
8 O8 O O8 N N N 0 -2.007 0.491 -0.79
9 N9 N N9 N Y N 0 0.218 0.527 -0.074
10 C10 C C10 N Y N 0 1.533 0.257 -0.332
11 C5 C C5 N Y N 0 1.884 -0.333 -1.571
12 N6 N N6 N Y N 0 0.952 -0.611 -2.469
13 C4 C C4 N Y N 0 3.307 -0.619 -1.818
14 O4 O O4 N N N 0 3.678 -1.121 -2.862
15 N3 N N3 N Y N 0 4.187 -0.3 -0.841
16 C2 C C2 N Y N 0 3.762 0.254 0.305
17 O2 O O2 N N N 0 4.588 0.525 1.16
18 N1 N N1 N Y N 0 2.485 0.521 0.553
19 C11 C C11 N N N 0 -0.183 1.134 1.197
20 C12 C C12 S N N 0 -0.486 0.032 2.214
21 O12 O O12 N N N 0 -1.546 -0.79 1.723
22 C13 C C13 S N N 0 -0.906 0.666 3.542
23 O13 O O13 N N N 0 0.154 1.488 4.033
24 C14 C C14 R N N 0 -1.209 -0.435 4.559
25 O14 O O14 N N N 0 -2.269 -1.258 4.068
26 C15 C C15 N N N 0 -1.628 0.197 5.887
27 O15 O O15 N N N 0 -1.912 -0.831 6.838
28 H19O H OH19 N N N 0 -3.584 0.91 -6.823
29 H171 H 1H17 N N N 0 -1.868 1.391 -3.606
30 H172 H 2H17 N N N 0 -0.598 0.762 -4.682
31 H161 H 1H16 N N N 0 -1.028 -1.532 -3.847
32 H162 H 2H16 N N N 0 -2.299 -0.903 -2.772
33 HO8 H HO8 N N N 0 -2.668 0.279 -1.463
34 HN3 H HN3 N N N 0 5.132 -0.474 -0.969
35 H111 H 1H11 N N N 0 -1.074 1.743 1.044
36 H112 H 2H11 N N N 0 0.625 1.762 1.571
37 H121 H 1H12 N N N 0 0.404 -0.576 2.367
38 H12O H OH12 N N N 0 -2.314 -0.214 1.601
39 H131 H 1H13 N N N 0 -1.797 1.274 3.389
40 H13O H OH13 N N N 0 0.921 0.913 4.155
41 H15O H OH15 N N N 0 -2.172 -0.39 7.658
42 H141 H 1H14 N N N 0 -0.318 -1.044 4.712
43 H14O H OH14 N N N 0 -3.037 -0.682 3.947
44 H151 H 1H15 N N N 0 -2.52 0.806 5.734
45 H152 H 2H15 N N N 0 -0.82 0.825 6.262