Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RUS

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 4.33 0.936 0.358
2 N1 N N1 N N N 0 -2.284 -0.162 0.904
3 C2 C C2 N N N 0 -2.408 0.634 -0.174
4 SE2 SE SE2 N N N 0 -1.041 0.564 -1.577
5 N3 N N3 N N N 0 -3.417 1.452 -0.307
6 C4 C C4 N N N 0 -4.372 1.524 0.637
7 O4 O O4 N N N 0 -5.313 2.291 0.506
8 C5 C C5 N N N 0 -4.275 0.701 1.786
9 C6 C C6 N N N 0 -3.218 -0.136 1.896
10 C1' C C1* R N N 0 -1.139 -1.069 1.009
11 O1P O O1P N N N 0 4.026 1.863 -0.754
12 C2' C C2* R N N 0 -1.152 -2.089 -0.152
13 O2' O O2* N N N 0 -1.714 -3.33 0.28
14 O2P O O2P N N N 0 5.495 -0.079 -0.093
15 C3' C C3* S N N 0 0.339 -2.265 -0.513
16 O3' O O3* N N N 0 0.745 -3.621 -0.317
17 O3P O O3P N N Y 0 4.818 1.778 1.641
18 C4' C C4* R N N 0 1.078 -1.331 0.471
19 O4' O O4* N N N 0 0.097 -0.339 0.844
20 C5' C C5* N N N 0 2.271 -0.667 -0.219
21 O5' O O5* N N N 0 3.007 0.1 0.737
22 H5 H H5 N N N 0 -5.029 0.741 2.559
23 H6 H H6 N N N 0 -3.115 -0.777 2.759
24 H1' H H1* N N N 0 -1.15 -1.584 1.969
25 H2' H H2* N N N 0 -1.709 -1.693 -1.001
26 HO2' H HO2* N N N 0 -1.746 -4.007 -0.41
27 HO2P H HO2P N N N 0 5.747 -0.717 0.589
28 H3' H H3* N N N 0 0.522 -1.956 -1.543
29 HO3' H HO3* N N N 0 0.269 -4.258 -0.868
30 HO3P H HO3P N N Y 0 5.612 2.307 1.485
31 H4' H H4* N N N 0 1.407 -1.888 1.348
32 H5' H H5* N N N 0 2.918 -1.434 -0.645
33 H5'A H H5*A N N N 0 1.913 -0.012 -1.013
34 HSE2 H HSE2 N N N 0 -1.592 1.622 -2.583