Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RV3

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C18 C C1 N Y N 0 -2.323 0.356 0.925
2 C17 C C2 N Y N 0 -2.421 -0.01 -0.424
3 C15 C C3 N N N 0 -1.196 -0.281 -1.204
4 C13 C C4 N N N 0 1.228 -0.446 -1.39
5 C12 C C5 N Y N 0 2.436 -0.26 -0.509
6 C11 C C6 N Y N 0 3.153 0.945 -0.318
7 C10 C C7 N Y N 0 3.007 2.242 -0.827
8 C20 C C8 N Y N 0 -4.702 0.51 1.064
9 C19 C C9 N Y N 0 -3.447 0.609 1.656
10 C02 C C10 N N N 0 2.594 -2.619 0.348
11 C04 C C11 N Y N 0 3.029 -1.219 0.251
12 C06 C C12 N Y N 0 4.2 0.663 0.582
13 C07 C C13 N Y N 0 5.076 1.679 0.952
14 C08 C C14 N Y N 0 4.912 2.946 0.438
15 C09 C C15 N Y N 0 3.879 3.222 -0.448
16 C22 C C16 N Y N 0 -6.828 0.456 0.474
17 C24 C C17 N Y N 0 -4.818 0.139 -0.288
18 C25 C C18 N Y N 0 -3.668 -0.118 -1.032
19 N05 N N1 N Y N 0 4.106 -0.667 0.918
20 N14 N N2 N N N 0 0.013 -0.176 -0.617
21 N21 N N3 N Y N 0 -5.99 0.697 1.518
22 N23 N N4 N Y N 0 -6.145 0.128 -0.583
23 O01 O O1 N N N 0 3.265 -3.48 1.138
24 O03 O O2 N N N 0 1.629 -3.001 -0.285
25 O16 O O3 N N N 0 -1.278 -0.598 -2.374
26 H181 H H1 N N N 0 -1.352 0.434 1.391
27 H131 H H2 N N N 0 1.283 0.245 -2.232
28 H132 H H3 N N N 0 1.203 -1.47 -1.762
29 H101 H H4 N N N 0 2.207 2.466 -1.517
30 H191 H H5 N N N 0 -3.363 0.886 2.696
31 H071 H H6 N N N 0 5.882 1.475 1.642
32 H081 H H7 N N N 0 5.592 3.733 0.728
33 H091 H H8 N N N 0 3.764 4.221 -0.842
34 H221 H H9 N N N 0 -7.905 0.521 0.518
35 H251 H H10 N N N 0 -3.743 -0.4 -2.072
36 H051 H H11 N N N 0 4.698 -1.14 1.523
37 H141 H H12 N N N 0 0.079 0.077 0.317
38 H211 H H13 N N N 0 -6.25 0.952 2.417
39 H2 H H15 N N N 0 2.942 -4.391 1.17