Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RYA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 41


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 -1.997 -1.028 -0.098
2 C14 C C2 N Y N 0 2.807 -0.652 0.569
3 C5 C C3 N Y N 0 0.174 0.468 0.353
4 C6 C C4 N Y N 0 -0.741 -1.503 -0.423
5 C11 C C5 N Y N 0 4.863 0.986 -0.319
6 C7 C C6 N N N 0 -3.059 -3.24 -0.548
7 C8 C C7 N N N 0 -3.321 2.212 0.928
8 C9 C C8 N Y N 0 2.576 0.7 0.353
9 C10 C C9 N Y N 0 3.606 1.518 -0.092
10 C12 C C10 N Y N 0 5.093 -0.367 -0.108
11 C13 C C11 N Y N 0 4.064 -1.184 0.342
12 N1 N N1 N N N 0 -3.359 0.749 0.805
13 N2 N N2 N N N 0 -3.149 -1.795 -0.328
14 C3 C C12 N Y N 0 -2.115 0.247 0.468
15 N3 N N3 N Y N 0 -1.014 0.96 0.675
16 C1 C C13 N N N 0 -4.346 -1.165 -0.342
17 C2 C C14 R N N 0 -4.398 0.328 -0.141
18 N4 N N4 N Y N 0 0.314 -0.733 -0.186
19 O1 O O1 N N N 0 -5.368 -1.795 -0.514
20 N5 N N5 N N N 0 1.304 1.238 0.582
21 O2 O O2 N N N 0 6.329 -0.89 -0.331
22 F1 F F1 N N N 0 4.291 -2.498 0.559
23 F2 F F2 N N N 0 5.864 1.78 -0.757
24 C15 C C15 N N N 0 -2.929 2.803 -0.363
25 C16 C C16 N N N 0 -2.617 3.274 -1.392
26 C17 C C17 N N N 0 -5.772 0.718 0.409
27 H1 H H1 N N N 0 2.007 -1.287 0.919
28 H2 H H2 N N N 0 -0.62 -2.482 -0.863
29 H3 H H3 N N N 0 -3.132 -3.759 0.408
30 H4 H H4 N N N 0 -3.872 -3.561 -1.198
31 H5 H H5 N N N 0 -2.104 -3.477 -1.018
32 H6 H H6 N N N 0 -4.308 2.579 1.21
33 H7 H H7 N N N 0 -2.596 2.494 1.691
34 H8 H H8 N N N 0 3.427 2.569 -0.26
35 H9 H H9 N N N 0 -4.239 0.826 -1.097
36 H10 H H10 N N N 0 1.214 2.15 0.901
37 H11 H H11 N N N 0 6.909 -0.873 0.442
38 H12 H H12 N N N 0 -2.337 3.695 -2.312
39 H13 H H13 N N N 0 -5.816 1.799 0.542
40 H14 H H14 N N N 0 -6.545 0.406 -0.292
41 H15 H H15 N N N 0 -5.932 0.227 1.369